- Transcript BART1_0-u18118.022
- Transcript IDBART1_0-u18118.022
- Gene IDBART1_0-u18118
Barley RTD
Exon Structure of BART1_0-u18118.022
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 30561371 | 30561074 | + |
| chr3H | 2 | 30561823 | 30561684 | + |
| chr3H | 3 | 30562313 | 30562226 | + |
| chr3H | 4 | 30562615 | 30562410 | + |
| chr3H | 5 | 30562874 | 30562713 | + |
| chr3H | 6 | 30563162 | 30562969 | + |
| chr3H | 7 | 30563897 | 30563747 | + |
| chr3H | 8 | 30564580 | 30563994 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.444368 | 2.07034 | 0.0197142 |
| morex | ETI | 4.40263 | 5.81791 | 13.5675 |
| morex | LEA | 0.00000786751 | 0 | 0 |
| morex | EPI | 1.18431 | 1.87846 | 3.90999 |
| morex | ROO | 0 | 0 | 0.876782 |
| morex | ROO2 | 0 | 0.619163 | 0.0987717 |
| morex | NOD | 0.581321 | 0.963302 | 3.57199 |
| morex | RAC | 0.0000472654 | 0.0782287 | 2.1371 |
| morex | INF1 | 2.62338 | 1.68492 | 0 |
| morex | INF2 | 0 | 0 | 0.00000640104 |
| morex | CAR5 | 0.00000729341 | 3.68681 | 2.62275 |
| morex | CAR15 | 0 | 0.0000249465 | 0.31318 |
| morex | LEM | 2.85493 | 3.14616 | 2.65338 |
| morex | LOD | 1.47162 | 0.5021 | 0.611418 |
| morex | PAL | 0.708883 | 0 | 1.42014 |
| morex | SEN | 7.63744 | 11.3508 | 7.34326 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g41910.1 | +1 | 5e-142 | 417 | 201/221 (91%) | protein|GTP-binding protein, putative, expressed |
| TAIR PP10 | AT3G12080 @ ARAPORT AT3G12080.1 @ TAIR |
+1 | 0.0 | 358 | 170/219 (78%) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663 |
| BRACH PP3 | Bradi4g12180.1.p | +1 | 0.0 | 437 | 215/221 (97%) | pacid=32786407 transcript=Bradi4g12180.1 locus=Bradi4g12180 ID=Bradi4g12180.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1826 bp)
>BART1_0-u18118.022 1826 150831_barley_pseudomolecules ACAGGGTAACAGGGCTATCGTTGTTGATGAACCTGGTGTAACAAGGGATCGTTTGTATGG ACGATCTTATTGGGGTGATCAAGAGTTTATGGTTATTGATACTGGGGGTGTCATTACTCT ATCGAAGTCTCAAGCAGGTGTAATGGAAGAACTTGCCATCACAACTACTGTTGGTATGGA TGGGATTCCAATGGCCTCTCGAGAAGCTGCTATTGCTAGGATGCCATCAATGATTGAGAA GCAAGCTGTTGCCGCCGTTGAAGAAGCAGCTGTCCTTCTTTTCCTTGTGGATGGTCAGGC TGGTCTTGTGGCAGCTGATATAGAAATTGCTGATTGGTTACGTCGCAACTTCTCACACAA GTGCATCATACTTGCTGTAAACAAATGTGAATCGCCACGGAAAGGGCAAATGCAAGCATT AGAATTTTGGTCATTAGGGTTTTCACCTTTACCAATATCTGCTATTACCGGCACTGGAAC TGGAGAGCTCCTGGATATGGTCTCTTCGGAACTGAAAAAGTTCGAGTTTAGGCATTACAG GGACTAGAAGGATTGGATGATGTTGAAGAAGACGAAAACCGCGTTCCTGCTATTTCTATT GTTGGAAGACCAAATGTTGGAAAAAGTAGCATTCTAAATGCTTTGGTGGGAGAAGATAGA ACTATTGTGAGCCCAGTTAGTGGTACCACCCGTGATGCCATTGATACTGAGTTAACCACA GAGGATGGGCAGAAATACAAACTCATCGATACGGCTGGCATCCGACGGAGAGCAGCAGTT GCTTCTGCTGGCAGCACAACTGAAACACTTTCAGTAAAGCGTGCATTTAGTGCAATTCGT CGATCTGATGTAGTTGCCCTTGTTATTGAAGCGATGGCCTGCGTCTCTGAGCAGGATTAT AAAATTGCAGAAAGGATTGAGAAAGAGGGAAAGGCATGTGTCATTGTTGTGAACAAATGG GATACAATCCCAAACAAGAACAATGAGAGTACTACACATTATGAACAGGATGTAAGAGAG AAGCTTCGTGTACTTGACTGGGCACCTATTGTTTACTGTTCTGCGATAAATGGGAACAGC GTTGAAAAGATTATTTCTGCTGCTTCTTTGGTTGAAAAGGAAAGGTCTAGAAGACTCGGC ACCTCTATTCTTAACCAAGTGATTAGAGAAGCTGTAGCATTCAAAGCACCACCCCGAACA AGAGGTGGCAAAAGAGGCCGCGTTTATTACACAACACAGGATCTTGTTTTTCTCCTGCAT GCAGGCTGCTGTTCGTCCACCAACGTTTGTTCTCTTCGTCAATGACGCAAAACTCTTCCC TGAGCCGTATCGGCGGTACATGCACAAGCAGCTCCGGTCTGACGCTGGATTCCCGGGCAC GCCTATTCGTCTACTGTGGCGTAGCAGGAAGCGGACTGATAGGCAACAGAGGAGATCAAA TACGGAGGCTCGTGGTGCACTTGTAGCGGCGAGTTAGCATGCGAAGCAATGTTGCTACCT TCAAAAACACAAGGAAAATGTGGCGAGCTAGGAGTACCACGGTATCCCTTTTCCTCCTTG TTCACGCGCGTTTCCTGGCTGCGAACGTGTGACTATCAATGTGCCAAGAAGTTAAGGTTC ATATTCCTCAACTACTGCCAAAGTTGAAGTGCGGTCACTGTACTCTAATAGTATAATTTT ATGGCCTCTCAACTGCTAGAATGTATGGAATTTTATGGCCCCTCTCTCTCTCTCAGATGA ACATCAACTTTTCTGTTTTCATGCGATGTTGCATGCATGTATGATTATTGATGGTTTCTT TTGTCTTCAATCTCATTTTGATGATG
Protein Sequence (181 aa)
>BART1_0-u18118.022 181 150831_barley_pseudomolecules QGNRAIVVDEPGVTRDRLYGRSYWGDQEFMVIDTGGVITLSKSQAGVMEELAITTTVGMD GIPMASREAAIARMPSMIEKQAVAAVEEAAVLLFLVDGQAGLVAADIEIADWLRRNFSHK CIILAVNKCESPRKGQMQALEFWSLGFSPLPISAITGTGTGELLDMVSSELKKFEFRHYR D