- Transcript BART1_0-u18118.020
- Transcript IDBART1_0-u18118.020
- Gene IDBART1_0-u18118
Barley RTD
Exon Structure of BART1_0-u18118.020
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 30561371 | 30561074 | + |
| chr3H | 2 | 30561823 | 30561684 | + |
| chr3H | 3 | 30562313 | 30562170 | + |
| chr3H | 4 | 30562615 | 30562410 | + |
| chr3H | 5 | 30562874 | 30562713 | + |
| chr3H | 6 | 30564590 | 30562969 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.662082 | 1.24427 | 0.50892 |
| morex | ETI | 4.6723 | 3.5069 | 3.56701 |
| morex | LEA | 2.33011 | 1.73474 | 2.3514 |
| morex | EPI | 2.86325 | 2.68928 | 2.3061 |
| morex | ROO | 0.221878 | 0.166235 | 0.144542 |
| morex | ROO2 | 0.318137 | 0.0966713 | 0.357057 |
| morex | NOD | 0.44791 | 0.478592 | 0.730781 |
| morex | RAC | 0.942618 | 0.845884 | 0.780399 |
| morex | INF1 | 2.08825 | 1.73452 | 2.46816 |
| morex | INF2 | 5.9787 | 5.1384 | 5.60916 |
| morex | CAR5 | 2.0256 | 1.14219 | 0.693818 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.461524 | 0.301894 | 0.393906 |
| morex | LOD | 0.319603 | 0.344204 | 0.115494 |
| morex | PAL | 0.470103 | 0.696978 | 0.783362 |
| morex | SEN | 8.2608 | 3.66652 | 2.3785 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g41910.1 | +3 | 1e-102 | 322 | 155/171 (91%) | protein|GTP-binding protein, putative, expressed |
| TAIR PP10 | AT3G12080 @ ARAPORT AT3G12080.2 @ TAIR |
+3 | 6e-144 | 275 | 129/168 (77%) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851677 FORWARD LENGTH=587 |
| BRACH PP3 | Bradi4g12180.2.p | +3 | 5e-178 | 339 | 166/171 (97%) | pacid=32786406 transcript=Bradi4g12180.2 locus=Bradi4g12180 ID=Bradi4g12180.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2572 bp)
>BART1_0-u18118.020 2572 150831_barley_pseudomolecules ACAGGGTAACAGGGCTATCGTTGTTGATGAACCTGGTGTAACAAGGGATCGTTTGTATGG ACGATCTTATTGGGGTGATCAAGAGTTTATGGTTATTGATACTGGGGGTGTCATTACTCT ATCGAAGTCTCAAGCAGGTGTAATGGAAGAACTTGCCATCACAACTACTGTTGGTATGGA TGGGATTCCAATGGCCTCTCGAGAAGCTGCTATTGCTAGGATGCCATCAATGATTGAGAA GCAAGCTGTTGCCGCCGTTGAAGAAGCAGCTGTCCTTCTTTTCCTTGTGGATGGTCAGGC TGGTCTTGTGGCAGCTGATATAGAAATTGCTGATTGGTTACGTCGCAACTTCTCACACAA GTGCATCATACTTGCTGTAAACAAATGTGAATCGCCACGGAAAGGGCAAATGCAAGCATT AGAATTTTGGTCATTAGGTTGGCAGGGTTTATATTTATTTGCTGCTCGGCTCATCTTTCC TCTATTCCTGCTAGGTTTTCACCTTTACCAATATCTGCTATTACCGGCACTGGAACTGGA GAGCTCCTGGATATGGTCTCTTCGGAACTGAAAAAGTTCGAGTTTAGGCATTACAGGGAC TAGAAGGATTGGATGATGTTGAAGAAGACGAAAACCGCGTTCCTGCTATTTCTATTGTTG GAAGACCAAATGTTGGAAAAAGTAGCATTCTAAATGCTTTGGTGGGAGAAGATAGAACTA TTGTGAGCCCAGTTAGTGGTACCACCCGTGATGCCATTGATACTGAGTTAACCACAGAGG ATGGGCAGAAATACAAACTCATCGATACGGCTGGCATCCGACGGAGAGCAGCAGTTGCTT CTGCTGGCAGCACAACTGAAACACTTTCAGTAAAGCGTGCATTTAGTGCAATTCGTCGAT CTGATGTAGTTGCCCTTGTTATTGAAGCGATGGCCTGCGTCTCTGAGCAGGATTATAAAA TTGCAGAAAGGATTGAGAAAGAGGGAAAGGCATGTGTCATTGTTGTGAACAAATGGGATA CAATCCCAAACAAGAACAATGAGAGTACTACACATTATGAACAGGATGTAAGAGAGAAGC TTCGTGTACTTGACTGGGCACCTATTGTTTACTGTTCTGCGATAAATGGGAACAGCGTTG AAAAGTAAAACCCTAATCTTAGTTCTAGAATCTCAGTCTTTGGATACTTCGTTGTTCGTT CAGATATTAGCTGTATATTTCCCCCCTACAGGCTTTAGTGTGTACATTTCACCCTTTTGG GTTATACTTATACCTCTGCAATGATCAATTTACATGCGCTGCCTTCTAGAACATCATTTC CATATTTTGTTGCATACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATCACTAAAGTA GTAATCTAAATGATCTTATATTTCTTTATGGAGGGAGTACTTCAAAGTCCCTACAACAAG ATTCTTATGGACTCGTAGATGTGTAATGCCAAGGGCTGGTGTAGTGGGTGACTGGGTCAT GGTTACTGTAACTTTCTTGCTAATTGACATATGAAACATGTGTTTGCCTAAGTTTTCTGT GCTGACTGGACATGCAAAATTTTCTGGATTCCCACTTTTCCCGCTTGATGAGATGTCTAT GCCTGTATTTGTATCCTCCTGCTACTTGCGTTCTAGACACCAGCACCGCATATTAACATT GTCCTGTGTTGGCATTCTCTAATATATGGTGTATGGATTTGTTCTCAGGATTATTTCTGC TGCTTCTTTGGTTGAAAAGGAAAGGTCTAGAAGACTCGGCACCTCTATTCTTAACCAAGT GATTAGAGAAGCTGTAGCATTCAAAGCACCACCCCGAACAAGAGGTGGCAAAAGAGGCCG CGTTTATTACACAACACAGGTGACCTTTTTGGAAAGAGATGATCGTCACTTCTTTCAGTC TGTACAGTTGTATCTCCAAACTACCTTGCAGCATTTTCATTCTTCAGAAACAAAGGATCT TGTTTTTCTCCTGCATGCAGGCTGCTGTTCGTCCACCAACGTTTGTTCTCTTCGTCAATG ACGCAAAACTCTTCCCTGAGCCGTATCGGCGGTACATGCACAAGCAGCTCCGGTCTGACG CTGGATTCCCGGGCACGCCTATTCGTCTACTGTGGCGTAGCAGGAAGCGGACTGATAGGC AACAGAGGAGATCAAATACGGAGGCTCGTGGTGCACTTGTAGCGGCGAGTTAGCATGCGA AGCAATGTTGCTACCTTCAAAAACACAAGGAAAATGTGGCGAGCTAGGAGTACCACGGTA TCCCTTTTCCTCCTTGTTCACGCGCGTTTCCTGGCTGCGAACGTGTGACTATCAATGTGC CAAGAAGTTAAGGTTCATATTCCTCAACTACTGCCAAAGTTGAAGTGCGGTCACTGTACT CTAATAGTATAATTTTATGGCCTCTCAACTGCTAGAATGTATGGAATTTTATGGCCCCTC TCTCTCTCTCAGATGAACATCAACTTTTCTGTTTTCATGCGATGTTGCATGCATGTATGA TTATTGATGGTTTCTTTTGTCTTCAATCTCATTTTGATGATGTGCTCATTTG
Protein Sequence (189 aa)
>BART1_0-u18118.020 189 150831_barley_pseudomolecules QGNRAIVVDEPGVTRDRLYGRSYWGDQEFMVIDTGGVITLSKSQAGVMEELAITTTVGMD GIPMASREAAIARMPSMIEKQAVAAVEEAAVLLFLVDGQAGLVAADIEIADWLRRNFSHK CIILAVNKCESPRKGQMQALEFWSLGWQGLYLFAARLIFPLFLLGFHLYQYLLLPALELE SSWIWSLRN