- Transcript BART1_0-u18118.001
- Transcript IDBART1_0-u18118.001
- Gene IDBART1_0-u18118
Barley RTD
Exon Structure of BART1_0-u18118.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 30560371 | 30559687 | + |
| chr3H | 2 | 30560762 | 30560701 | + |
| chr3H | 3 | 30560965 | 30560882 | + |
| chr3H | 4 | 30561371 | 30561078 | + |
| chr3H | 5 | 30561823 | 30561684 | + |
| chr3H | 6 | 30562313 | 30562226 | + |
| chr3H | 7 | 30562615 | 30562415 | + |
| chr3H | 8 | 30562874 | 30562713 | + |
| chr3H | 9 | 30563162 | 30562969 | + |
| chr3H | 10 | 30563897 | 30563747 | + |
| chr3H | 11 | 30565839 | 30564019 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0.542261 | 0.472181 |
| morex | LEA | 0 | 1.70496 | 0.585664 |
| morex | EPI | 0.454349 | 0 | 0.268182 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0.00000153053 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 2.19595 | 0.974632 | 1.37513 |
| morex | INF1 | 0.683588 | 0 | 0 |
| morex | INF2 | 3.82164 | 4.46025 | 3.90906 |
| morex | CAR5 | 0.157956 | 0 | 0 |
| morex | CAR15 | 0.809391 | 0 | 0.0339065 |
| morex | LEM | 0.707575 | 0 | 0.63751 |
| morex | LOD | 0 | 0.75573 | 0.000328758 |
| morex | PAL | 0 | 0 | 0.894915 |
| morex | SEN | 1.43377 | 0 | 1.00296 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g41910.1 | +1 | 0.0 | 568 | 278/320 (87%) | protein|GTP-binding protein, putative, expressed |
| TAIR PP10 | AT3G12080 @ ARAPORT AT3G12080.1 @ TAIR |
+1 | 0.0 | 747 | 368/500 (74%) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663 |
| BRACH PP3 | Bradi4g12180.2.p | +1 | 0.0 | 956 | 496/531 (93%) | pacid=32786406 transcript=Bradi4g12180.2 locus=Bradi4g12180 ID=Bradi4g12180.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3882 bp)
>BART1_0-u18118.001 3882 150831_barley_pseudomolecules GACGTACTGAAAAGAACATTCAAGGGGGATATGCCGCAATAGTAGTAATTTATTAAAGAC CGTAACGATGCGTTATTGTTCATTCACATGTAGCGACTTACCCTGGTGGCTAGCAGCAGT GTTGGAAAAGGTACGTCAAGTTTTCTATTCCTCGCTGCTGCCCTACGGGCTGCCTTTCGG TGTGCCGGCCCAGCCGCGCGCCTTGTGCGTCGCGCTGGTTATTCGCCGCAAAATGCGGTA AATAGGACAGGAGGTCCCCGCCGGCTGTAGATGCTCTTATCCCCTTCCGTCCCCCGCTGC CCCAGGCCTCGCGCTCTACGGCGCGCCATGGCCATGCCTTCCACTCCTTCCTCCTCGCGG CCGCCCATGCTGCACCCCGCCTCCAAAACTCCGAACCCGCCCCGCCTGCTGCCGCTCGTC ACCAGAGGCGCTGCTGCCCCTCGCCCTCCTCTGCTCATCTCCTTCGCTCCGCCCGCGCCT GGTCGTCGCGGGCTCCGCGCCGCTGCCGCCCAACAACCCGCCTACGAAGATGGGGAGGAG GAAGAAGATGGGGAGGAGGATGGGGAGTGTTACAGCGAGGAGGAGGAGGAGGATGAGGAG GAGTTGGACGTGGAGGCGATGGAGGAAGAGGCGCGGCGCGCCGCCGCCGACCTCGCCGCG CGCCTCGACCGCGAGCTCCGCGTCGATGGTGATGTTCGGGAGAAAAGAAGAACCATGAGG GACAAGACATCAACAACATCTAAACATATCCCAGACAGTAAGCTTCCAAAGGTGGCTATT ATTGGTAGACCTAATGTGGGTAAATCTGCGCTGTTCAATCGGCTTGTCGGGGGTAACAGG GCTATCGTTGTTGATGAACCTGGTGTAACAAGGGATCGTTTGTATGGACGATCTTATTGG GGTGATCAAGAGTTTATGGTTATTGATACTGGGGGTGTCATTACTCTATCGAAGTCTCAA GCAGGTGTAATGGAAGAACTTGCCATCACAACTACTGTTGGTATGGATGGGATTCCAATG GCCTCTCGAGAAGCTGCTATTGCTAGGATGCCATCAATGATTGAGAAGCAAGCTGTTGCC GCCGTTGAAGAAGCAGCTGTCCTTCTTTTCCTTGTGGATGGTCAGGCTGGTCTTGTGGCA GCTGATATAGAAATTGCTGATTGGTTACGTCGCAACTTCTCACACAAGTGCATCATACTT GCTGTAAACAAATGTGAATCGCCACGGAAAGGGCAAATGCAAGCATTAGAATTTTGGTCA TTAGGGTTTTCACCTTTACCAATATCTGCTATTACCGGCACTGGAACTGGAGAGCTCCTG GATATGGTCTCTTCGGAACTGAAAAAGTTCGAGGCATTACAGGGACTAGAAGGATTGGAT GATGTTGAAGAAGACGAAAACCGCGTTCCTGCTATTTCTATTGTTGGAAGACCAAATGTT GGAAAAAGTAGCATTCTAAATGCTTTGGTGGGAGAAGATAGAACTATTGTGAGCCCAGTT AGTGGTACCACCCGTGATGCCATTGATACTGAGTTAACCACAGAGGATGGGCAGAAATAC AAACTCATCGATACGGCTGGCATCCGACGGAGAGCAGCAGTTGCTTCTGCTGGCAGCACA ACTGAAACACTTTCAGTAAAGCGTGCATTTAGTGCAATTCGTCGATCTGATGTAGTTGCC CTTGTTATTGAAGCGATGGCCTGCGTCTCTGAGCAGGATTATAAAATTGCAGAAAGGATT GAGAAAGAGGGAAAGGCATGTGTCATTGTTGTGAACAAATGGGATACAATCCCAAACAAG AACAATGAGAGTACTACACATTATGAACAGGATGTAAGAGAGAAGCTTCGTGTACTTGAC TGGGCACCTATTGTTTACTGTTCTGCGATAAATGGGAACAGCGTTGAAAAGATTATTTCT GCTGCTTCTTTGGTTGAAAAGGAAAGGTCTAGAAGACTCGGCACCTCTATTCTTAACCAA GTGATTAGAGAAGCTGTAGCATTCAAAGCACCACCCCGAACAAGAGGTGGCAAAAGAGGC CGCGTTTATTACACAACACAGGCTGCTGTTCGTCCACCAACGTTTGTTCTCTTCGTCAAT GACGCAAAACTCTTCCCTGAGCCGTATCGGCGGTACATGCACAAGCAGCTCCGGTCTGAC GCTGGATTCCCGGGCACGCCTATTCGTCTACTGTGGCGTAGCAGGAAGCGGACTGATAGG CAACAGAGGAGATCAAATACGGAGGCTCGTGGTGCACTTGTAGCGGCGAGTTAGCATGCG AAGCAATGTTGCTACCTTCAAAAACACAAGGAAAATGTGGCGAGCTAGGAGTACCACGGT ATCCCTTTTCCTCCTTGTTCACGCGCGTTTCCTGGCTGCGAACGTGTGACTATCAATGTG CCAAGAAGTTAAGGTTCATATTCCTCAACTACTGCCAAAGTTGAAGTGCGGTCACTGTAC TCTAATAGTATAATTTTATGGCCTCTCAACTGCTAGAATGTATGGAATTTTATGGCCCCT CTCTCTCTCTCAGATGAACATCAACTTTTCTGTTTTCATGCGATGTTGCATGCATGTATG ATTATTGATGGTTTCTTTTGTCTTCAATCTCATTTTGATGATGTGCTCATTTGCAACACA GATAGGCCTCGGTACGAAAAAAATGGATTGTGCGTTATTGATTAAAATGACAGCATAAAT AGAATTTTAAAGTTGTTAAATAGGTAAAATAACATAATATTTAGATTTCATGCATCACTG TAGATTCAAATTACATTATAAATAAACTTTTAATAAATTAAATAGGTAAACTAACATTAT ATTTATATTCTACACATTTTTTGAATCAAAGTTCATATATGATAATTTAAAATTGAAGTT ATGGTTTAGAAGATATTTTTTTAAAGTATTTGTTAATTATAACTGAAATGCGGATTAATT AACGACATGGATTGGTCATGGTATGAAAAAATTAAATTGTGCGCTATTGGTTAAAATTAC AGCATAAATAGAATTTTAAAATTATTAAATAGGTAAAATAACATCATATTTAGATTGTAC GCATCACTATTGATTAAAATCACATTGTAAACATAATTTTGAAAAACTTAAATAGGTAAA CTAACATTATATTCAGATTCTACACATGTTTCTAATCAAATTTCATATATAATAATTTAA AATTACAGTTACGGTTTAAAATATATAATTTTTAAAGTATTTGTCACTTATAATTGAGCT GCGGATTAATTAACAACATGGATCGGCCTCGGTACGAGATATTGATTATATGCTATTGAT TAAAATTACAGCATAAATAGAATTTTAAAATTATTAAATAGGTAAAATAATAAATAGAAA TTTAAAATTGTTAAATAGGTAAAATAACATCATATTTAGATTGTACACATCACTATTGAT TAAAATTACATTATAAATAGAATTTTTAAAACATAAATAGGTAAACTAACATTATGTTCA GATTCTACACATTTTAAAATTGGAGTTGCAGTTTAAAAGATATGATTTTTGAAGTATTTA TCACTTATAATCGAACTGTAGATTAATTAATAGAAATTGTAGGGAATTTTCTAAAAACAT ATGAAAAATGATTCGTTTTTTACTTAAGTCTGGGCTGTAGGTTTATTTTATGAAAACTAA AGAAGGTTTTTACAAAAATTATAAAAAACAATTTCTTTTCTCACTTAAATCCGAACTGCG GGTTAATTTCGGAAAAATACAGGAGTATTTTATAAAATGCACGACGGACGATCAGAAGCA CTATTTGTTTTATTATTAGGTAATGAAATGGCTCACTGCTACAGCTTTTAAAAGAACTAG ATATTTCCATTTTATGAAAAGTCCAGGCGTACCATGTCTATG
Protein Sequence (667 aa)
>BART1_0-u18118.001 667 150831_barley_pseudomolecules MLLSPSVPRCPRPRALRRAMAMPSTPSSSRPPMLHPASKTPNPPRLLPLVTRGAAAPRPP LLISFAPPAPGRRGLRAAAAQQPAYEDGEEEEDGEEDGECYSEEEEEDEEELDVEAMEEE ARRAAADLAARLDRELRVDGDVREKRRTMRDKTSTTSKHIPDSKLPKVAIIGRPNVGKSA LFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDQEFMVIDTGGVITLSKSQAGVMEELAIT TTVGMDGIPMASREAAIARMPSMIEKQAVAAVEEAAVLLFLVDGQAGLVAADIEIADWLR RNFSHKCIILAVNKCESPRKGQMQALEFWSLGFSPLPISAITGTGTGELLDMVSSELKKF EALQGLEGLDDVEEDENRVPAISIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDT ELTTEDGQKYKLIDTAGIRRRAAVASAGSTTETLSVKRAFSAIRRSDVVALVIEAMACVS EQDYKIAERIEKEGKACVIVVNKWDTIPNKNNESTTHYEQDVREKLRVLDWAPIVYCSAI NGNSVEKIISAASLVEKERSRRLGTSILNQVIREAVAFKAPPRTRGGKRGRVYYTTQAAV RPPTFVLFVNDAKLFPEPYRRYMHKQLRSDAGFPGTPIRLLWRSRKRTDRQQRRSNTEAR GALVAAS