- Transcript BART1_0-u16393.013
- Transcript IDBART1_0-u16393.013
- Gene IDBART1_0-u16393
Barley RTD
Exon Structure of BART1_0-u16393.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752632673 | 752632335 | - |
| chr2H | 2 | 752633100 | 752632995 | - |
| chr2H | 3 | 752633394 | 752633314 | - |
| chr2H | 4 | 752633633 | 752633497 | - |
| chr2H | 5 | 752634002 | 752633909 | - |
| chr2H | 6 | 752634160 | 752634090 | - |
| chr2H | 7 | 752634845 | 752634684 | - |
| chr2H | 8 | 752635015 | 752634959 | - |
| chr2H | 9 | 752635164 | 752635102 | - |
| chr2H | 10 | 752635510 | 752635387 | - |
| chr2H | 11 | 752635861 | 752635627 | - |
| chr2H | 12 | 752636131 | 752636029 | - |
| chr2H | 13 | 752636514 | 752636220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.447252 | 1.47944 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.949422 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.303399 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 3.3279 | 0.410993 | 2.4207 |
| morex | INF1 | 2.00982 | 0.796147 | 1.78931 |
| morex | INF2 | 3.44343 | 2.71058 | 3.97658 |
| morex | CAR5 | 0.519442 | 0 | 0 |
| morex | CAR15 | 0 | 0.000000146392 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.253954 | 0 | 0.17965 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g29220.1 | +2 | 4e-169 | 491 | 228/310 (74%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+2 | 2e-137 | 422 | 196/307 (64%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +2 | 3e-160 | 482 | 226/322 (70%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1867 bp)
>BART1_0-u16393.013 1867 150831_barley_pseudomolecules CCATCTTGTTCCAAGTTTTTCGGTTATTCATCTATGGGGGGTATTTACACCACCCTGACA TATATGATTTTAGTTTCAATCACATAACTTAGGGTGGCTATTTCATGAAATAGTTATGTG AGGTCTTTTTGTGTTGGACATATTGAATCGATGCAGTCTGGGAAAGCAGCGGCTCAAGGT TTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAATATGATTCCATCATGGATT GAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCAATACATATCCATTGATTGG TCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAATGCCGTGTAAAAT CTGTCATCCAAGTTCATGACCCCTTGTTCTATTGGAAGGTTGCAATAGAAGGAGGCATGG GCTTGGCAGAATCCTATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTC TAAATCTTATCCTGGTAAAACTATATCATAGTCCATGAGCTTATGGGTAGAGCTATTTCC TGTTCATTACAGATCAAATCCATGATCAATTATTTTGCAGATTCTCATTGCTAACAGAGA CGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTTTGGTTGTCACCCTTCCATGTAAT AGCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAACACTGCAAC ACAAACTCGTCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTTTCGCTTTT TCTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCAAGGAGAACGAAAGCTTAGAAGC AGCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCATCA TGTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAACTGG CTGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAAAGT AAGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAATACC ACCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGAATA CATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGTCCT CCAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGACTTCAT AAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTCTGCCAT GACCGCGTCATCAAGGTTCTGCATAGAGCATGTCGAGAATATTGGGCCCAATTACTACAC AACTCTGATGCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGCCCTGGG CTTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGCTGGTTT CAAGTCACGAGCAATTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCT AGGCCAGCCTTGATGGCCGGAGACAACATATCCTTCTCCGTTCAGCGGCCGAATGGTTAC TTGTCAGTACCGTACGAGATTTTAATAAGTCAGTCCTGGAATGATTCGCTCATGCCGGAA TCCTACTCAGGTGGTTTGGTGATCTATCTTGTTGTTTAACCATGCAATGGTTAGTTTTTC GTGGGAGTGTCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAAGGAACT GGTTTGTTTGCTTTAATATCTATGAGGAAGAGTTGATGTCCTTGCTTGTAGTTTCTCATG ATCTGAT
Protein Sequence (259 aa)
>BART1_0-u16393.013 259 150831_barley_pseudomolecules MTYSCAVFKENESLEAAQQRKLSLLINKAKVKREHHVLDIGSGWGSLAIETVKQTGCKYT GVTLSAEQHKYAERKVREAGLEDRINFLLCDYRKIPPFKYDAIISCGMIEHVGHEYMDEF FACCESYLAEDGILVLQFISVPEERYEQYRKRPDFIKEYIFPGGCLPSLARIMSAMTASS RFCIEHVENIGPNYYTTLMHWRDNFMANRDQVLALGFDERFLRIWEYYLIFSAAGFKSRA IGDYQVVFSRPGNRRLGQP