Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU2Hr1G12218094.7--11296-631Containing




Transcripts from Gene BART1_0-u16393

TranscriptLength(bp)Description
BART1_0-u16393.00137413741 bp MSTRG.16393.1 MSTRG.16393
BART1_0-u16393.00236123612 bp MSTRG.16393.2 MSTRG.16393
BART1_0-u16393.00342954295 bp MSTRG.16393.3 MSTRG.16393
BART1_0-u16393.00434043404 bp MSTRG.16393.4 MSTRG.16393
BART1_0-u16393.00541584158 bp MSTRG.16393.5 MSTRG.16393
BART1_0-u16393.00634673467 bp MSTRG.16393.6 MSTRG.16393
BART1_0-u16393.00745514551 bp MSTRG.16393.7 MSTRG.16393
BART1_0-u16393.00839893989 bp MSTRG.16393.8 MSTRG.16393
BART1_0-u16393.00934123412 bp MSTRG.16393.9 MSTRG.16393
BART1_0-u16393.01019041904 bp MSTRG.16393.10 MSTRG.16393
BART1_0-u16393.01137843784 bp MSTRG.16393.11 MSTRG.16393
BART1_0-u16393.01230683068 bp MSTRG.16393.12 MSTRG.16393
BART1_0-u16393.01318671867 bp MSTRG.16393.13 MSTRG.16393



Exon Structure of BART1_0-u16393


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g29220.1 +1 1e-159 492 229/312 (73%) protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23510 @ ARAPORT
AT3G23510.1 @ TAIR
+1 3e-129 423 197/309 (64%) Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3 Bradi5g02490.1.p +1 6e-151 483 227/324 (70%) pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons