- Transcript BART1_0-u16393.012
- Transcript IDBART1_0-u16393.012
- Gene IDBART1_0-u16393
Barley RTD
Exon Structure of BART1_0-u16393.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752632673 | 752632273 | - |
| chr2H | 2 | 752633100 | 752632995 | - |
| chr2H | 3 | 752633394 | 752633314 | - |
| chr2H | 4 | 752633633 | 752633497 | - |
| chr2H | 5 | 752634002 | 752633909 | - |
| chr2H | 6 | 752634160 | 752634090 | - |
| chr2H | 7 | 752634845 | 752634684 | - |
| chr2H | 8 | 752635015 | 752634959 | - |
| chr2H | 9 | 752635164 | 752635102 | - |
| chr2H | 10 | 752635679 | 752635387 | - |
| chr2H | 11 | 752635861 | 752635766 | - |
| chr2H | 12 | 752636131 | 752636029 | - |
| chr2H | 13 | 752636345 | 752636210 | - |
| chr2H | 14 | 752636704 | 752636676 | - |
| chr2H | 15 | 752637051 | 752636874 | - |
| chr2H | 16 | 752637512 | 752637389 | - |
| chr2H | 17 | 752637747 | 752637597 | - |
| chr2H | 18 | 752637930 | 752637852 | - |
| chr2H | 19 | 752638100 | 752638041 | - |
| chr2H | 20 | 752638282 | 752638181 | - |
| chr2H | 21 | 752639218 | 752638674 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 1.31529 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.704833 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.339755 | 0.687109 |
| morex | INF1 | 0 | 3.70508 | 3.94927 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.305347 | 0 | 0.14791 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g29220.1 | +1 | 3e-164 | 492 | 229/312 (73%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+1 | 4e-133 | 423 | 197/309 (64%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +3 | 2e-170 | 456 | 249/393 (63%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3068 bp)
>BART1_0-u16393.012 3068 150831_barley_pseudomolecules TGGCTTCCTAATCCCTTGACTAATCATGAAATATCTTTGTAACCCTATATTATAACATAC TATATTTGTTCCTTACCAAGTTTTTTCTGTAGGTAACATATCCGCAAATGATGGAATGGT TAGAAGGGCTCGGGGTTGAGATGGAGAGGTCAGACATGTCTTTCTCTGTGAGCACACAAT CTAAAGGAGGCGGTGGAGGATGTGAGTGGGGAAATGGTAACGGTATATCGAGCCTCTTGG CGCAAAAAACCAACATACTGAAACCCAGTTTTTGGCACATGGTCTGTGAGATACTCAAGT TCAAGAACAATGCCCTGACGTAAGCAGTCCAGGCCCAAAGTTTTCATGTGCATATATAAT ACTTCCATTGGTATTTAGATGCCTTGTGTTAATACTATATGATGTCAATTAATTCGCTGG TCTGATCTTTGAAATGAAGGTACCTGGAGGACCATGAACGTAACCCTGATCTGGATCGTA ATGAGACACTGGGGCAGTTCATTCAGTCGCATGGATATTCCCTATCGTTTCAAGAGGCTT ATCTTATTCCAGTCTGCACAGGCACGTGGTCATGTTCATCACAAGATGTTTTGAGCCTGT CTGCTTTCTTGGTGCTGTCATTTTGCCGTAACCATGGCCTTCTTCAGCTGTTTCGTCACT CCCAGTTGCCCACTGTCAAGCCTAGTTCGCAGTCCTATGTAAACAAGGTAAAAGGAGAAT TGGAGAGCATTGGCTGTCGAATTAAAACCAGTTGTCGGGTCAAATCTGTTTCAAGTCTTG ATGGAGCTGGCTACAGAGTCTTGGAGAATGATGGTTCAGTGGAAACATACGACAGTGTCA TCTTTGGGGTCCATGCATCCAATGCTCTCAAATTATTAGGAGCTGAAGCATCACATCACG AACGAAGAATTCTAGGTGCCTGTCAGTATGTCCAAAGAGATATATACCTCCACTGCGATC AAAATTTGATGCCCCGAAAATCAGCAGCATGGAGTGCGTGGAATTTCCTTGGGACAACTA GTAGGGGTTTTTCTATTACTTACTGGCTAAACCAAATTCAGAAATTTGAATCGGGCAGGC CTTTCCTGGTGACACTCAATCCCCCTTGTGTTCCGGATCATGTACTACTTAAATGGAATA CAAGCCTTCCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCC AGGGAAAGAGGGGAATATGGTTCTGTGGGGCATATCAAGGTCATGGCTTCCATGAAGACG GATTAAAGCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAA TATGATTCCATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCA ATACATATCCATTGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTGG TAAAGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCTA TTGGAAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGACGGTTGTTT CTCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCATTGCTAACAG AGACGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTCTGAAACCTTCAATTGTCCAC TAGATTCCTATGAATTGTTTGATAAAAATGAAGTAGTACCTATGAGTATGCGTTTGTGAT TAATCCTGTACATGCTGTTTTTCGGTTTGCAGGTTTTGGTTGTCACCCTTCCATGTAATA GCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAACACTGCAACA CAAACTCGTCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTTTCGCTTTTT CTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCAAGGAGAACGAAAGCTTAGAAGCA GCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCATCAT GTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAACTGGC TGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAAAGTA AGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAATACCA CCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGAATAC ATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGTCCTC CAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGACTTCATA AAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTCTGCCATG ACCGCGTCATCAAGGTTCTGCATAGAGCATGTCGAGAATATTGGGCCCAATTACTACACA ACTCTGATGCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGCCCTGGGC TTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGCTGGTTTC AAGTCACGAGCAATTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCTA GGCCAGCCTTGATGGCCGGAGACAACATATCCTTCTCCGTTCAGCGGCCGAATGGTTACT TGTCAGTACCGTACGAGATTTTAATAAGTCAGTCCTGGAATGATTCGCTCATGCCGGAAT CCTACTCAGGTGGTTTGGTGATCTATCTTGTTGTTTAACCATGCAATGGTTAGTTTTTCG TGGGAGTGTCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAAGGAACTG GTTTGTTTGCTTTAATATCTATGAGGAAGAGTTGATGTCCTTGCTTGTAGTTTCTCATGA TCTGATCTATTCGGTGTTTGCCGTTTTCAATGCTTGCTTGCGAAGAGAATCAATATATGT TCCTGAGT
Protein Sequence (259 aa)
>BART1_0-u16393.012 259 150831_barley_pseudomolecules MTYSCAVFKENESLEAAQQRKLSLLINKAKVKREHHVLDIGSGWGSLAIETVKQTGCKYT GVTLSAEQHKYAERKVREAGLEDRINFLLCDYRKIPPFKYDAIISCGMIEHVGHEYMDEF FACCESYLAEDGILVLQFISVPEERYEQYRKRPDFIKEYIFPGGCLPSLARIMSAMTASS RFCIEHVENIGPNYYTTLMHWRDNFMANRDQVLALGFDERFLRIWEYYLIFSAAGFKSRA IGDYQVVFSRPGNRRLGQP