- Transcript BART1_0-u16393.001
- Transcript IDBART1_0-u16393.001
- Gene IDBART1_0-u16393
Barley RTD
Exon Structure of BART1_0-u16393.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752632673 | 752631869 | - |
| chr2H | 2 | 752633100 | 752632995 | - |
| chr2H | 3 | 752633394 | 752633314 | - |
| chr2H | 4 | 752633633 | 752633497 | - |
| chr2H | 5 | 752634002 | 752633909 | - |
| chr2H | 6 | 752634160 | 752634090 | - |
| chr2H | 7 | 752634845 | 752634684 | - |
| chr2H | 8 | 752635015 | 752634959 | - |
| chr2H | 9 | 752635164 | 752635102 | - |
| chr2H | 10 | 752635510 | 752635387 | - |
| chr2H | 11 | 752635679 | 752635627 | - |
| chr2H | 12 | 752635861 | 752635766 | - |
| chr2H | 13 | 752636131 | 752636029 | - |
| chr2H | 14 | 752636358 | 752636210 | - |
| chr2H | 15 | 752636704 | 752636676 | - |
| chr2H | 16 | 752637051 | 752636874 | - |
| chr2H | 17 | 752637512 | 752637389 | - |
| chr2H | 18 | 752637747 | 752637597 | - |
| chr2H | 19 | 752637930 | 752637852 | - |
| chr2H | 20 | 752638100 | 752638041 | - |
| chr2H | 21 | 752638282 | 752638181 | - |
| chr2H | 22 | 752638779 | 752638674 | - |
| chr2H | 23 | 752639126 | 752638900 | - |
| chr2H | 24 | 752643795 | 752643212 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 9.91708 | 58.3467 | 53.3893 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 37.1369 | 4.87559 | 6.20582 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 5.14141 | 0.760212 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 3.75577 | 0.00190887 | 0 |
| morex | RAC | 25.6206 | 28.9075 | 44.6026 |
| morex | INF1 | 79.5159 | 32.5625 | 32.6319 |
| morex | INF2 | 60.9091 | 100.547 | 93.3921 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0.0832319 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.000000002312 | 0 | 0.0000000508543 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g16650.1 | +3 | 0.0 | 1034 | 529/798 (66%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+3 | 0.0 | 956 | 489/836 (58%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +3 | 0.0 | 1167 | 591/861 (69%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3741 bp)
>BART1_0-u16393.001 3741 150831_barley_pseudomolecules GACGGGTCCTCAGCCAGTGGAGACCGTAACGTTCGTTTTTTTTTCTGGAGTCGACCATAA CATTTGAGCTTATGTGATGACACCCCATTAATTTTCTACAGTACCAAAAAAATACAGACC CGTATACAAAGTCAAATAAACACAACGGCCAGCATTCAGAGGTAGGTGGTTGGTCGATCC AAGGACGCACTGCGGATGGTGGCTATTTTCAGTAGTATTGGAATGCATTCCGTCCCTGAG ATGTAGCACTACTGCACTAGTAGTATATTCTGCAAGTTGTGACGCGCGCTACAGCCTACC GCAGCCGCTCCGGCTTAAATAGAGGGGCAGGCCTGAGAGCGCAGAGAGCAGAGAGCAGAG AGCAGAGCGGAGCATAGACACCGAGAAGAATGAGGGTGGCGGTGGTTGGCGGCGGGGTGA GCGGGCTGGCGGCGGCGCATGAGCTCGCCGCCAGCGGGGGAGACGGCGTGCGAGTGACCC TGTACGAGGAGGAGGCCAGCCTCGGCGGGCACGCCAGGACGGTGGCCGTCGATGACGGCG CCGGCTGCGTCAAGCTCGACCTCGGCTTCATGGTCTTCAACCAGGTAACATATCCGCAAA TGATGGAATGGTTAGAAGGGCTCGGGGTTGAGATGGAGAGGTCAGACATGTCTTTCTCTG TGAGCACACAATCTAAAGGAGGCGGTGGAGGATGTGAGTGGGGAAATGGTAACGGTATAT CGAGCCTCTTGGCGCAAAAAACCAACATACTGAAACCCAGTTTTTGGCACATGGTCTGTG AGATACTCAAGTTCAAGAACAATGCCCTGACGTACCTGGAGGACCATGAACGTAACCCTG ATCTGGATCGTAATGAGACACTGGGGCAGTTCATTCAGTCGCATGGATATTCCCTATCGT TTCAAGAGGCTTATCTTATTCCAGTCTGCACAGGCACGTGGTCATGTTCATCACAAGATG TTTTGAGCCTGTCTGCTTTCTTGGTGCTGTCATTTTGCCGTAACCATGGCCTTCTTCAGC TGTTTCGTCACTCCCAGTTGCCCACTGTCAAGCCTAGTTCGCAGTCCTATGTAAACAAGG TAAAAGGAGAATTGGAGAGCATTGGCTGTCGAATTAAAACCAGTTGTCGGGTCAAATCTG TTTCAAGTCTTGATGGAGCTGGCTACAGAGTCTTGGAGAATGATGGTTCAGTGGAAACAT ACGACAGTGTCATCTTTGGGGTCCATGCATCCAATGCTCTCAAATTATTAGGAGCTGAAG CATCACATCACGAACGAAGAATTCTAGGTGCCTGTCAGTATGTCCAAAGAGATATATACC TCCACTGCGATCAAAATTTGATGCCCCGAAAATCAGCAGCATGGAGTGCGTGGAATTTCC TTGGGACAACTAGTAGGGGTTTTTCTATTACTTACTGGCTAAACCAAATTCAGAAATTTG AATCGGGCAGGCCTTTCCTGGTGACACTCAATCCCCCTTGTGTTCCGGATCATGTACTAC TTAAATGGAATACAAGCCTTCCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGC TTGATCAGATCCAGGGAAAGAGGGGAATATGGTTCTGTGGGGCATATCAAGGTCATGGCT TCCATGAAGACGGATTAAAGTCTGGGAAAGCAGCGGCTCAAGGTTTGCTTGGAAAGAAAT GTGAGCTTCTGCTGAACCCAAAGAATATGATTCCATCATGGATTGAGGCTGGGGCACGCC TTCTAGTTGCAAGATTTTTCAACCAATACATATCCATTGGTAACTTGATATTGGTCGAAG AAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAATGCCGTGTAAAATCTGTCA TCCAAGTTCATGACCCCTTGTTCTATTGGAAGGTTGCAATAGAAGGAGGCATGGGCTTGG CAGAATCCTATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATC TTATCCTGATTCTCATTGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCAGAAAAG GGTTTTGGTTGTCACCCTTCCATGTAATAGCTCAATTGGCATATGCTAAACACTTTTTGC GCCAGGCAACAAGGAAGAACACTGCAACACAAACTCGTCGAAACATCTCTGAGCACTATG ATCTTAGTAACGACTTTTTTTCGCTTTTTCTGGATAAATCGATGACTTACTCCTGTGCAG TTTTCAAGGAGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTCTAATCA ACAAGGCTAAAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGGGAAGTT TAGCAATAGAAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTATCGGCGG AGCAGCATAAATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCATAAATT TTCTGCTGTGCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAAGCTGTG GTATGATTGAACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTGAGTCTT ACTTGGCTGAAGATGGGATATTGGTCCTCCAGTTCATCTCAGTTCCAGAGGAACGGTACG AGCAATACAGAAAAAGGCCAGACTTCATAAAAGAGTACATATTCCCTGGTGGTTGCCTTC CTTCTTTGGCCCGTATAATGTCTGCCATGACCGCGTCATCAAGGTTCTGCATAGAGCATG TCGAGAATATTGGGCCCAATTACTACACAACTCTGATGCACTGGAGGGACAACTTCATGG CCAACAGAGACCAAGTTTTGGCCCTGGGCTTTGATGAAAGGTTCCTCCGTATATGGGAGT ACTACCTCATATTCTCTGCGGCTGGTTTCAAGTCACGAGCAATTGGAGATTACCAGGTTG TTTTCTCTCGTCCAGGCAATCGTCGTCTAGGCCAGCCTTGATGGCCGGAGACAACATATC CTTCTCCGTTCAGCGGCCGAATGGTTACTTGTCAGTACCGTACGAGATTTTAATAAGTCA GTCCTGGAATGATTCGCTCATGCCGGAATCCTACTCAGGTGGTTTGGTGATCTATCTTGT TGTTTAACCATGCAATGGTTAGTTTTTCGTGGGAGTGTCTTGTTATCCATCAATTAACTA GAATTTTGAGAATTGTATGTAAGGAACTGGTTTGTTTGCTTTAATATCTATGAGGAAGAG TTGATGTCCTTGCTTGTAGTTTCTCATGATCTGATCTATTCGGTGTTTGCCGTTTTCAAT GCTTGCTTGCGAAGAGAATCAATATATGTTCCTGAGTATCATGTTTCACCAATGACTGAG GAGGACTTTTGCTAACAGAAAAGATGAGATCTCTTTGGCTAGTTTTTGTTAAAGGGGATG GCAGCAGTAAATACCTTCGTCCTTCCTCCATGTTGGAATCAAGAAGTTAGTGTGCAGTGA CGAGTGTGGACTCAAGTGTTGCAACACGTACGTACGCATGCACCTAAGTTGCAAGCTACG CAAAGCTAACTACTGTACGTACTACAGTACAAGCTGCAGGTTGTAAAGTGGTCTGTATAT CGTGTGATCGTAATTGCCGGTTGGTAAAGCTAGCACAGTGACATTTCTTCAATTAATGAC AGTTTTGTTTATCTTTATCCACCCATCTACTCCCTCCGTTCCTAAATATAAGTCTTTTAA GCGATTTCACTAAAGGACTAC
Protein Sequence (863 aa)
>BART1_0-u16393.001 863 150831_barley_pseudomolecules MRVAVVGGGVSGLAAAHELAASGGDGVRVTLYEEEASLGGHARTVAVDDGAGCVKLDLGF MVFNQVTYPQMMEWLEGLGVEMERSDMSFSVSTQSKGGGGGCEWGNGNGISSLLAQKTNI LKPSFWHMVCEILKFKNNALTYLEDHERNPDLDRNETLGQFIQSHGYSLSFQEAYLIPVC TGTWSCSSQDVLSLSAFLVLSFCRNHGLLQLFRHSQLPTVKPSSQSYVNKVKGELESIGC RIKTSCRVKSVSSLDGAGYRVLENDGSVETYDSVIFGVHASNALKLLGAEASHHERRILG ACQYVQRDIYLHCDQNLMPRKSAAWSAWNFLGTTSRGFSITYWLNQIQKFESGRPFLVTL NPPCVPDHVLLKWNTSLPVPSVAAAKAYLQLDQIQGKRGIWFCGAYQGHGFHEDGLKSGK AAAQGLLGKKCELLLNPKNMIPSWIEAGARLLVARFFNQYISIGNLILVEEGGSVFSFGK ACDKCRVKSVIQVHDPLFYWKVAIEGGMGLAESYIDGCFSVLDKREGLLNLILILIANRD ERRNRRIARKGFWLSPFHVIAQLAYAKHFLRQATRKNTATQTRRNISEHYDLSNDFFSLF LDKSMTYSCAVFKENESLEAAQQRKLSLLINKAKVKREHHVLDIGSGWGSLAIETVKQTG CKYTGVTLSAEQHKYAERKVREAGLEDRINFLLCDYRKIPPFKYDAIISCGMIEHVGHEY MDEFFACCESYLAEDGILVLQFISVPEERYEQYRKRPDFIKEYIFPGGCLPSLARIMSAM TASSRFCIEHVENIGPNYYTTLMHWRDNFMANRDQVLALGFDERFLRIWEYYLIFSAAGF KSRAIGDYQVVFSRPGNRRLGQP