- Transcript BART1_0-u16377.011
- Transcript IDBART1_0-u16377.011
- Gene IDBART1_0-u16377
Barley RTD
Exon Structure of BART1_0-u16377.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752590438 | 752590417 | + |
| chr2H | 2 | 752590903 | 752590765 | + |
| chr2H | 3 | 752591094 | 752590992 | + |
| chr2H | 4 | 752591357 | 752591262 | + |
| chr2H | 5 | 752591496 | 752591444 | + |
| chr2H | 6 | 752591736 | 752591613 | + |
| chr2H | 7 | 752592021 | 752591959 | + |
| chr2H | 8 | 752592164 | 752592108 | + |
| chr2H | 9 | 752592439 | 752592278 | + |
| chr2H | 10 | 752593033 | 752592963 | + |
| chr2H | 11 | 752593214 | 752593121 | + |
| chr2H | 12 | 752593626 | 752593490 | + |
| chr2H | 13 | 752593809 | 752593729 | + |
| chr2H | 14 | 752594122 | 752594017 | + |
| chr2H | 15 | 752594775 | 752594437 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 50.4023 | 0 | 17.7211 |
| morex | ETI | 1.97852 | 0.788293 | 1.57416 |
| morex | LEA | 4.30415 | 1.01141 | 11.6841 |
| morex | EPI | 1.37995 | 3.48515 | 0.5733 |
| morex | ROO | 0 | 0.0264424 | 0.255296 |
| morex | ROO2 | 0.0000000295251 | 1.13604 | 0.950042 |
| morex | NOD | 1.62909 | 3.3175 | 0.833867 |
| morex | RAC | 116.997 | 138.274 | 162.321 |
| morex | INF1 | 2.37028 | 16.6676 | 20.2992 |
| morex | INF2 | 0.0000000470519 | 14.9851 | 43.6813 |
| morex | CAR5 | 1.34117 | 0.765521 | 0.489557 |
| morex | CAR15 | 0 | 0.160681 | 0 |
| morex | LEM | 0.711464 | 1.32287 | 2.72588 |
| morex | LOD | 1.73256 | 6.17737 | 1.56268 |
| morex | PAL | 5.09555 | 1.78774 | 2.65203 |
| morex | SEN | 3.89792 | 1.64824 | 0.834248 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g16650.2 | +1 | 0.0 | 562 | 278/396 (70%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+1 | 1e-159 | 476 | 238/392 (61%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +1 | 0.0 | 550 | 271/409 (66%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1647 bp)
>BART1_0-u16377.011 1647 150831_barley_pseudomolecules CTTCCATGAAGACGGATTAAAGTCTGGGAAAGCAGCGGCTCAAGGTTTGCTTGGAAAGAA ATGTGAGCTTCTGCTGAACCCAAAGAATATGATTCCATCATGGATTGAGGCTGGGGCACG CCTTCTAGTTGCAAGATTTTTCAACCAATACATATCCATTGATTGGTCGAAGAAGGAGGT AGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTT CATGACCCCTTGTTCTATTGGAAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCC TATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTG ATTCTCATTGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTTTGG TTGTCACCCTTCCATGTAATAGCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGGCA ACAAGGAAGAACACTGCAACACAAACTCGTCGAAACATCTCTGAGCACTATGATCTTAGT AACGACTTTTTTTCGCTTTTTCTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCAAG GAGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGGCT AAAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATA GAAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGCAT AAATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTG TGCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGATT GAACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCT GAAGATGGGATATTGGTCCTCCAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAATAC AGAAAAAGGCCAGACTTCATAAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTG GCCCGTATAATGTCTGCCATGACCGCGTCATCAAGGTTCTGCATAGAGCATGTCGAGAAT ATTGGGCCCAATTACTACACAACTCTGATGCACTGGAGGGACAACTTCATGGCCAACAGA GACCAAGTTTTGGCCCTGGGCTTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACCTC ATATTCTCTGCGGCTGGTTTCAAGTCACGAGCAATTGGAGATTACCAGGTTGTTTTCTCT CGTCCAGGCAATCGTCGTCTAGGCCAGCCTTGATGGCCGGAGACAACATATCCTTCTCCG TTCAGCGGCCGAATGGTTACTTGTCAGTACCGTACGAGATTTTAATAAGTCAGTCCTGGA ATGATTCGCTCATGCCGGAATCCTACTCAGGTGGTTTGGTGATCTATCTTGTTGTTTAAC CATGCAATGGTTAGTTTTTCGTGGGAGTGTCTTGTTATCCATCAATTAACTAGAATTTTG AGAATTGTATGTAAGGAACTGGTTTGTTTGCTTTAATATCTATGAGGAAGAGTTGATGTC CTTGCTTGTAGTTTCTCATGATCTGAT
Protein Sequence (356 aa)
>BART1_0-u16377.011 356 150831_barley_pseudomolecules MGLAESYIDGCFSVLDKREGLLNLILILIANRDERRNRRIARKGFWLSPFHVIAQLAYAK HFLRQATRKNTATQTRRNISEHYDLSNDFFSLFLDKSMTYSCAVFKENESLEAAQQRKLS LLINKAKVKREHHVLDIGSGWGSLAIETVKQTGCKYTGVTLSAEQHKYAERKVREAGLED RINFLLCDYRKIPPFKYDAIISCGMIEHVGHEYMDEFFACCESYLAEDGILVLQFISVPE ERYEQYRKRPDFIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRD NFMANRDQVLALGFDERFLRIWEYYLIFSAAGFKSRAIGDYQVVFSRPGNRRLGQP