- Gene BART1_0-u16377
- Gene IDBART1_0-u16377
- Location chr2H: 752586856 - 752595241
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU2Hr1G122160 | 93.5 | + | + | 7841 | -545 | Containing |
Transcripts from Gene BART1_0-u16377
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u16377.001 | 3467 | 3467 bp MSTRG.16377.1 MSTRG.16377 |
| BART1_0-u16377.002 | 3464 | 3464 bp MSTRG.16377.2 MSTRG.16377 |
| BART1_0-u16377.003 | 3343 | 3343 bp MSTRG.16377.3 MSTRG.16377 |
| BART1_0-u16377.004 | 2899 | 2899 bp MSTRG.16377.4 MSTRG.16377 |
| BART1_0-u16377.005 | 3185 | 3185 bp MSTRG.16377.5 MSTRG.16377 |
| BART1_0-u16377.006 | 2641 | 2641 bp MSTRG.16377.6 MSTRG.16377 |
| BART1_0-u16377.007 | 3348 | 3348 bp MSTRG.16377.7 MSTRG.16377 |
| BART1_0-u16377.008 | 3046 | 3046 bp MSTRG.16377.8 MSTRG.16377 |
| BART1_0-u16377.009 | 3211 | 3211 bp MSTRG.16377.9 MSTRG.16377 |
| BART1_0-u16377.010 | 3019 | 3019 bp MSTRG.16377.10 MSTRG.16377 |
| BART1_0-u16377.011 | 1647 | 1647 bp MSTRG.16377.11 MSTRG.16377 |
Exon Structure of BART1_0-u16377
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g16650.1 | +2 | 0.0 | 1033 | 529/799 (66%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+2 | 0.0 | 910 | 465/796 (58%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +2 | 0.0 | 1107 | 559/813 (69%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic |
| GO:0003676 | nucleic acid binding |
| GO:0004523 | RNA-DNA hybrid ribonuclease activity |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons