- Transcript BART1_0-u16377.010
- Transcript IDBART1_0-u16377.010
- Gene IDBART1_0-u16377
Barley RTD
Exon Structure of BART1_0-u16377.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752589262 | 752589180 | + |
| chr2H | 2 | 752589517 | 752589364 | + |
| chr2H | 3 | 752590240 | 752589602 | + |
| chr2H | 4 | 752590438 | 752590410 | + |
| chr2H | 5 | 752590913 | 752590778 | + |
| chr2H | 6 | 752591094 | 752590992 | + |
| chr2H | 7 | 752591357 | 752591262 | + |
| chr2H | 8 | 752591736 | 752591444 | + |
| chr2H | 9 | 752592021 | 752591959 | + |
| chr2H | 10 | 752592164 | 752592108 | + |
| chr2H | 11 | 752592439 | 752592278 | + |
| chr2H | 12 | 752593033 | 752592963 | + |
| chr2H | 13 | 752593214 | 752593121 | + |
| chr2H | 14 | 752593626 | 752593490 | + |
| chr2H | 15 | 752593809 | 752593729 | + |
| chr2H | 16 | 752594122 | 752594017 | + |
| chr2H | 17 | 752595151 | 752594437 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g29220.1 | +1 | 2e-164 | 492 | 229/312 (73%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+1 | 3e-133 | 423 | 197/309 (64%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +1 | 1e-155 | 483 | 227/324 (70%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3019 bp)
>BART1_0-u16377.010 3019 150831_barley_pseudomolecules GCAGGTAAAAGGAGAATTGGAGAGCATTGGCTGTCGAATTAAAACCAGTTGTCGGGTCAA ATCTGTTTCAAGTCTTGATGGAGCAGCTGGCTACAGAGTCTTGGAGAATGATGGTTCAGT GGAAACATACGACAGTGTCATCTTTGGGGTCCATGCATCCAATGCTCTCAAATTATTAGG AGCTGAAGCATCACATCACGAACGAAGAATTCTAGGTGCCTGTCAGTATGTCCAAAGAGA TATATACCTCCACTGCGATCAAAATTTGATGCCCCGAAAATCAGCAGCATGGAGTGCGTG GAATTTCCTTGGGACAACTAGTAGGGGTTTTTCTATTACTTACTGGCTAAACCAAATTCA GGTAAATTCTCTACTTTTCGTATGTATAGTTTGGTATAATGAATTAGTTTTACTGATGAC ATATTTTTTTGACGAAACAACCCTTCCCTGGCTTTACTACAATGCTGAAACCATTTTGTG CGTGTTACATGTACTCAGGACTAGGCATGCCTCCTCGGCCAAAAGGAAGAAACCAAATGA AGAAAAAAATATTTTCATCATGTTAGAACTCAGAACACCCTGTAGAGTAGGTTCACACAA TAACATCAAGACGGAAGCTTCAGCCTAACCCCTCCAGCAGCATGAATGTATTACTTCATT ATTAACTGTGGCATATTTGTTCTTTTTTGCTCTTCTAGAAATTTGAATCGGGCAGGCCTT TCCTGGTGACACTCAATCCCCCTTGTGTTCCGGATCATGTACTACTTAAATGGAATACAA GCCTTCCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCCAGG GAAAGAGGGGAATATGGTTCTGTGGGGCATATCAAGGTCATGGCTTCCATGAAGACGGAT TAAAGCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAATAT GATTCCATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCAATA CATATCCATTGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAA AGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCTATTG GAAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGACGGTTGTTTCTC TGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCATTGCTAACAGAGA CGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTCTGAAACCTTCAATTGTCCACTAG ATTCCTATGAATTGTTTGATAAAAATGAAGTAGTACCTATGAGTATGCGTTTGTGATTAA TCCTGTACATGCTGTTTTTCGGTTTGCAGGTTTTGGTTGTCACCCTTCCATGTAATAGCT CAATTGGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAACACTGCAACACAA ACTCGTCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTTTCGCTTTTTCTG GATAAATCGATGACTTACTCCTGTGCAGTTTTCAAGGAGAACGAAAGCTTAGAAGCAGCC CAACAACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCATCATGTT CTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAACTGGCTGC AAATACACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAAAGTAAGA GAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAATACCACCT TTTAAGTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGAATACATG GACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGTCCTCCAG TTCATCTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGACTTCATAAAA GAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTCTGCCATGACC GCGTCATCAAGGTTCTGCATAGAGCATGTCGAGAATATTGGGCCCAATTACTACACAACT CTGATGCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGCCCTGGGCTTT GATGAAAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGCTGGTTTCAAG TCACGAGCAATTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCTAGGC CAGCCTTGATGGCCGGAGACAACATATCCTTCTCCGTTCAGCGGCCGAATGGTTACTTGT CAGTACCGTACGAGATTTTAATAAGTCAGTCCTGGAATGATTCGCTCATGCCGGAATCCT ACTCAGGTGGTTTGGTGATCTATCTTGTTGTTTAACCATGCAATGGTTAGTTTTTCGTGG GAGTGTCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAAGGAACTGGTT TGTTTGCTTTAATATCTATGAGGAAGAGTTGATGTCCTTGCTTGTAGTTTCTCATGATCT GATCTATTCGGTGTTTGCCGTTTTCAATGCTTGCTTGCGAAGAGAATCAATATATGTTCC TGAGTATCATGTTTCACCAATGACTGAGGAGGACTTTTGCTAACAGAAAAGATGAGATCT CTTTGGCTAGTTTTTGTTAAAGGGGATGGCAGCAGTAAATACCTTCGTCCTTCCTCCATG TTGGAATCAAGAAGTTAGTGTGCAGTGACGAGTGTGGACTCAAGTGTTGCAACACGTACG TACGCATGCACCTAAGTTGCAAGCTACGCAAAGCTAACTACTGTACGTACTACAGTACAA GCTGCAGGTTGTAAAGTGGTCTGTATATCGTGTGATCGTAATTGCCGGTTGGTAAAGCTA GCACAGTGACATTTCTTCA
Protein Sequence (259 aa)
>BART1_0-u16377.010 259 150831_barley_pseudomolecules MTYSCAVFKENESLEAAQQRKLSLLINKAKVKREHHVLDIGSGWGSLAIETVKQTGCKYT GVTLSAEQHKYAERKVREAGLEDRINFLLCDYRKIPPFKYDAIISCGMIEHVGHEYMDEF FACCESYLAEDGILVLQFISVPEERYEQYRKRPDFIKEYIFPGGCLPSLARIMSAMTASS RFCIEHVENIGPNYYTTLMHWRDNFMANRDQVLALGFDERFLRIWEYYLIFSAAGFKSRA IGDYQVVFSRPGNRRLGQP