- Transcript BART1_0-u16377.002
- Transcript IDBART1_0-u16377.002
- Gene IDBART1_0-u16377
Barley RTD
Exon Structure of BART1_0-u16377.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752587162 | 752586856 | + |
| chr2H | 2 | 752588225 | 752587999 | + |
| chr2H | 3 | 752588451 | 752588346 | + |
| chr2H | 4 | 752588933 | 752588832 | + |
| chr2H | 5 | 752589073 | 752589014 | + |
| chr2H | 6 | 752589262 | 752589184 | + |
| chr2H | 7 | 752589517 | 752589367 | + |
| chr2H | 8 | 752589725 | 752589602 | + |
| chr2H | 9 | 752590240 | 752590063 | + |
| chr2H | 10 | 752590438 | 752590410 | + |
| chr2H | 11 | 752590913 | 752590765 | + |
| chr2H | 12 | 752591094 | 752590992 | + |
| chr2H | 13 | 752591357 | 752591262 | + |
| chr2H | 14 | 752591496 | 752591444 | + |
| chr2H | 15 | 752591736 | 752591613 | + |
| chr2H | 16 | 752592021 | 752591959 | + |
| chr2H | 17 | 752592164 | 752592108 | + |
| chr2H | 18 | 752592439 | 752592278 | + |
| chr2H | 19 | 752593033 | 752592963 | + |
| chr2H | 20 | 752593214 | 752593121 | + |
| chr2H | 21 | 752593626 | 752593490 | + |
| chr2H | 22 | 752593809 | 752593729 | + |
| chr2H | 23 | 752594122 | 752594017 | + |
| chr2H | 24 | 752595241 | 752594437 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.69291 | 0.795719 | 0.110692 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.914255 | 0 | 0.221301 |
| morex | EPI | 0 | 0 | 0.00284165 |
| morex | ROO | 0 | 0.244171 | 0.122183 |
| morex | ROO2 | 0.000000330717 | 0 | 0 |
| morex | NOD | 0.299935 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0.669404 | 3.48624 | 3.5172 |
| morex | INF2 | 3.71535 | 6.95834 | 3.87083 |
| morex | CAR5 | 0.00000960695 | 0 | 0.800678 |
| morex | CAR15 | 0 | 0 | 0.270764 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0.00000425762 | 0 |
| morex | PAL | 2.00859 | 0.000000000220431 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g16650.1 | +2 | 0.0 | 1034 | 529/798 (66%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+2 | 0.0 | 914 | 456/795 (57%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +2 | 0.0 | 1107 | 559/812 (69%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3464 bp)
>BART1_0-u16377.002 3464 150831_barley_pseudomolecules CAGACGGTGGCCCGGCGCCGTCCCGAATGCCTCTCCTACGAGGTGCTCCCCGGCGCAATA CGTTGCCCATTGCAGCTCTCTGCCTTCACCTGCTGCAGCGCCCTGCCGCTCGTCGTTTGA TGCAGGCCCCGTCGGGCTCGAAGAACATCAGGGAGCCTCGCCGTGAGCTCGTCGTCCCTA TTGGGTAGGCACGCAAGGTCAGGCAATCCAGGATTGATCGGCACCATAGCTCTCGCCCCT TTCCCCCATCTTCTCGACAGTTCGTCCGTACCAGCTCATTGCACGGAAGGTGCTCGATGG AATGCTTGTAACATATCCGCAAATGATGGAATGGTTAGAAGGGCTCGGGGTTGAGATGGA GAGGTCAGACATGTCTTTCTCTGTGAGCACACAATCTAAAGGAGGCGGTGGAGGATGTGA GTGGGGAAATGGTAACGGTATATCGAGCCTCTTGGCGCAAAAAACCAACATACTGAAACC CAGTTTTTGGCACATGGTCTGTGAGATACTCAAGTTCAAGAACAATGCCCTGACGTACCT GGAGGACCATGAACGTAACCCTGATCTGGATCGTAATGAGACACTGGGGCAGTTCATTCA GTCGCATGGATATTCCCTATCGTTTCAAGAGGCTTATCTTATTCCAGTCTGCACAGGCAC GTGGTCATGTTCATCACAAGATGTTTTGAGCCTGTCTGCTTTCTTGGTGCTGTCATTTTG CCGTAACCATGGCCTTCTTCAGCTGTTTCGTCACTCCCAGTTGCCCACTGTCAAGCCTAG TTCGCAGTCCTATGTAAACAAGGTAAAAGGAGAATTGGAGAGCATTGGCTGTCGAATTAA AACCAGTTGTCGGGTCAAATCTGTTTCAAGTCTTGATGGAGCTGGCTACAGAGTCTTGGA GAATGATGGTTCAGTGGAAACATACGACAGTGTCATCTTTGGGGTCCATGCATCCAATGC TCTCAAATTATTAGGAGCTGAAGCATCACATCACGAACGAAGAATTCTAGGTGCCTGTCA GTATGTCCAAAGAGATATATACCTCCACTGCGATCAAAATTTGATGCCCCGAAAATCAGC AGCATGGAGTGCGTGGAATTTCCTTGGGACAACTAGTAGGGGTTTTTCTATTACTTACTG GCTAAACCAAATTCAGAAATTTGAATCGGGCAGGCCTTTCCTGGTGACACTCAATCCCCC TTGTGTTCCGGATCATGTACTACTTAAATGGAATACAAGCCTTCCTGTTCCGTCTGTGGC CGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCCAGGGAAAGAGGGGAATATGGTTCTG TGGGGCATATCAAGGTCATGGCTTCCATGAAGACGGATTAAAGTCTGGGAAAGCAGCGGC TCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAATATGATTCCATC ATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCAATACATATCCAT TGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCTTGCGA CAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCTATTGGAAGGTTGC AATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGACGGTTGTTTCTCTGTTCTTGA CAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCATTGCTAACAGAGACGAGCGTAG GAACCGCCGCATTGCCAGAAAAGGGTTTTGGTTGTCACCCTTCCATGTAATAGCTCAATT GGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAACACTGCAACACAAACTCG TCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTTTCGCTTTTTCTGGATAA ATCGATGACTTACTCCTGTGCAGTTTTCAAGGAGAACGAAAGCTTAGAAGCAGCCCAACA ACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCATCATGTTCTTGA TATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAACTGGCTGCAAATA CACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAAAGTAAGAGAAGC TGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAATACCACCTTTTAA GTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGAATACATGGACGA ATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGTCCTCCAGTTCAT CTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGACTTCATAAAAGAGTA CATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTCTGCCATGACCGCGTC ATCAAGGTTCTGCATAGAGCATGTCGAGAATATTGGGCCCAATTACTACACAACTCTGAT GCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGCCCTGGGCTTTGATGA AAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGCTGGTTTCAAGTCACG AGCAATTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCTAGGCCAGCC TTGATGGCCGGAGACAACATATCCTTCTCCGTTCAGCGGCCGAATGGTTACTTGTCAGTA CCGTACGAGATTTTAATAAGTCAGTCCTGGAATGATTCGCTCATGCCGGAATCCTACTCA GGTGGTTTGGTGATCTATCTTGTTGTTTAACCATGCAATGGTTAGTTTTTCGTGGGAGTG TCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAAGGAACTGGTTTGTTT GCTTTAATATCTATGAGGAAGAGTTGATGTCCTTGCTTGTAGTTTCTCATGATCTGATCT ATTCGGTGTTTGCCGTTTTCAATGCTTGCTTGCGAAGAGAATCAATATATGTTCCTGAGT ATCATGTTTCACCAATGACTGAGGAGGACTTTTGCTAACAGAAAAGATGAGATCTCTTTG GCTAGTTTTTGTTAAAGGGGATGGCAGCAGTAAATACCTTCGTCCTTCCTCCATGTTGGA ATCAAGAAGTTAGTGTGCAGTGACGAGTGTGGACTCAAGTGTTGCAACACGTACGTACGC ATGCACCTAAGTTGCAAGCTACGCAAAGCTAACTACTGTACGTACTACAGTACAAGCTGC AGGTTGTAAAGTGGTCTGTATATCGTGTGATCGTAATTGCCGGTTGGTAAAGCTAGCACA GTGACATTTCTTCAATTAATGACAGTTTTGTTTATCTTTATCCACCCATCTACTCCCTCC GTTCCTAAATATAAGTCTTTTAAGCGATTTCACTAAAGGACTAC
Protein Sequence (800 aa)
>BART1_0-u16377.002 800 150831_barley_pseudomolecules MLVTYPQMMEWLEGLGVEMERSDMSFSVSTQSKGGGGGCEWGNGNGISSLLAQKTNILKP SFWHMVCEILKFKNNALTYLEDHERNPDLDRNETLGQFIQSHGYSLSFQEAYLIPVCTGT WSCSSQDVLSLSAFLVLSFCRNHGLLQLFRHSQLPTVKPSSQSYVNKVKGELESIGCRIK TSCRVKSVSSLDGAGYRVLENDGSVETYDSVIFGVHASNALKLLGAEASHHERRILGACQ YVQRDIYLHCDQNLMPRKSAAWSAWNFLGTTSRGFSITYWLNQIQKFESGRPFLVTLNPP CVPDHVLLKWNTSLPVPSVAAAKAYLQLDQIQGKRGIWFCGAYQGHGFHEDGLKSGKAAA QGLLGKKCELLLNPKNMIPSWIEAGARLLVARFFNQYISIGNLILVEEGGSVFSFGKACD KCRVKSVIQVHDPLFYWKVAIEGGMGLAESYIDGCFSVLDKREGLLNLILILIANRDERR NRRIARKGFWLSPFHVIAQLAYAKHFLRQATRKNTATQTRRNISEHYDLSNDFFSLFLDK SMTYSCAVFKENESLEAAQQRKLSLLINKAKVKREHHVLDIGSGWGSLAIETVKQTGCKY TGVTLSAEQHKYAERKVREAGLEDRINFLLCDYRKIPPFKYDAIISCGMIEHVGHEYMDE FFACCESYLAEDGILVLQFISVPEERYEQYRKRPDFIKEYIFPGGCLPSLARIMSAMTAS SRFCIEHVENIGPNYYTTLMHWRDNFMANRDQVLALGFDERFLRIWEYYLIFSAAGFKSR AIGDYQVVFSRPGNRRLGQP