- Transcript BART1_0-u16377.001
- Transcript IDBART1_0-u16377.001
- Gene IDBART1_0-u16377
Barley RTD
Exon Structure of BART1_0-u16377.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752587162 | 752586856 | + |
| chr2H | 2 | 752588225 | 752587999 | + |
| chr2H | 3 | 752588451 | 752588346 | + |
| chr2H | 4 | 752588933 | 752588832 | + |
| chr2H | 5 | 752589073 | 752589014 | + |
| chr2H | 6 | 752589262 | 752589184 | + |
| chr2H | 7 | 752589517 | 752589364 | + |
| chr2H | 8 | 752589725 | 752589602 | + |
| chr2H | 9 | 752590240 | 752590063 | + |
| chr2H | 10 | 752590438 | 752590410 | + |
| chr2H | 11 | 752590913 | 752590765 | + |
| chr2H | 12 | 752591094 | 752590992 | + |
| chr2H | 13 | 752591357 | 752591262 | + |
| chr2H | 14 | 752591496 | 752591444 | + |
| chr2H | 15 | 752591736 | 752591613 | + |
| chr2H | 16 | 752592021 | 752591959 | + |
| chr2H | 17 | 752592164 | 752592108 | + |
| chr2H | 18 | 752592439 | 752592278 | + |
| chr2H | 19 | 752593033 | 752592963 | + |
| chr2H | 20 | 752593214 | 752593121 | + |
| chr2H | 21 | 752593626 | 752593490 | + |
| chr2H | 22 | 752593809 | 752593729 | + |
| chr2H | 23 | 752594122 | 752594017 | + |
| chr2H | 24 | 752595241 | 752594437 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.000000140819 | 0 | 0.000000152688 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.281445 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.0300235 | 0.00000000105405 | 0.00000000203534 |
| morex | NOD | 0 | 0 | 0.18122 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0.00000155287 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0.00783374 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0.00799813 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0.00000000318678 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g16650.1 | +2 | 0.0 | 1033 | 529/799 (66%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+2 | 0.0 | 910 | 465/796 (58%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +2 | 0.0 | 1107 | 559/813 (69%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3467 bp)
>BART1_0-u16377.001 3467 150831_barley_pseudomolecules CAGACGGTGGCCCGGCGCCGTCCCGAATGCCTCTCCTACGAGGTGCTCCCCGGCGCAATA CGTTGCCCATTGCAGCTCTCTGCCTTCACCTGCTGCAGCGCCCTGCCGCTCGTCGTTTGA TGCAGGCCCCGTCGGGCTCGAAGAACATCAGGGAGCCTCGCCGTGAGCTCGTCGTCCCTA TTGGGTAGGCACGCAAGGTCAGGCAATCCAGGATTGATCGGCACCATAGCTCTCGCCCCT TTCCCCCATCTTCTCGACAGTTCGTCCGTACCAGCTCATTGCACGGAAGGTGCTCGATGG AATGCTTGTAACATATCCGCAAATGATGGAATGGTTAGAAGGGCTCGGGGTTGAGATGGA GAGGTCAGACATGTCTTTCTCTGTGAGCACACAATCTAAAGGAGGCGGTGGAGGATGTGA GTGGGGAAATGGTAACGGTATATCGAGCCTCTTGGCGCAAAAAACCAACATACTGAAACC CAGTTTTTGGCACATGGTCTGTGAGATACTCAAGTTCAAGAACAATGCCCTGACGTACCT GGAGGACCATGAACGTAACCCTGATCTGGATCGTAATGAGACACTGGGGCAGTTCATTCA GTCGCATGGATATTCCCTATCGTTTCAAGAGGCTTATCTTATTCCAGTCTGCACAGGCAC GTGGTCATGTTCATCACAAGATGTTTTGAGCCTGTCTGCTTTCTTGGTGCTGTCATTTTG CCGTAACCATGGCCTTCTTCAGCTGTTTCGTCACTCCCAGTTGCCCACTGTCAAGCCTAG TTCGCAGTCCTATGTAAACAAGGTAAAAGGAGAATTGGAGAGCATTGGCTGTCGAATTAA AACCAGTTGTCGGGTCAAATCTGTTTCAAGTCTTGATGGAGCAGCTGGCTACAGAGTCTT GGAGAATGATGGTTCAGTGGAAACATACGACAGTGTCATCTTTGGGGTCCATGCATCCAA TGCTCTCAAATTATTAGGAGCTGAAGCATCACATCACGAACGAAGAATTCTAGGTGCCTG TCAGTATGTCCAAAGAGATATATACCTCCACTGCGATCAAAATTTGATGCCCCGAAAATC AGCAGCATGGAGTGCGTGGAATTTCCTTGGGACAACTAGTAGGGGTTTTTCTATTACTTA CTGGCTAAACCAAATTCAGAAATTTGAATCGGGCAGGCCTTTCCTGGTGACACTCAATCC CCCTTGTGTTCCGGATCATGTACTACTTAAATGGAATACAAGCCTTCCTGTTCCGTCTGT GGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCCAGGGAAAGAGGGGAATATGGTT CTGTGGGGCATATCAAGGTCATGGCTTCCATGAAGACGGATTAAAGTCTGGGAAAGCAGC GGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAATATGATTCC ATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCAATACATATC CATTGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCTTG CGACAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCTATTGGAAGGT TGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGACGGTTGTTTCTCTGTTCT TGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCATTGCTAACAGAGACGAGCG TAGGAACCGCCGCATTGCCAGAAAAGGGTTTTGGTTGTCACCCTTCCATGTAATAGCTCA ATTGGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAACACTGCAACACAAAC TCGTCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTTTCGCTTTTTCTGGA TAAATCGATGACTTACTCCTGTGCAGTTTTCAAGGAGAACGAAAGCTTAGAAGCAGCCCA ACAACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCATCATGTTCT TGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAACTGGCTGCAA ATACACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAAAGTAAGAGA AGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAATACCACCTTT TAAGTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGAATACATGGA CGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGTCCTCCAGTT CATCTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGACTTCATAAAAGA GTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTCTGCCATGACCGC GTCATCAAGGTTCTGCATAGAGCATGTCGAGAATATTGGGCCCAATTACTACACAACTCT GATGCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGCCCTGGGCTTTGA TGAAAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGCTGGTTTCAAGTC ACGAGCAATTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCTAGGCCA GCCTTGATGGCCGGAGACAACATATCCTTCTCCGTTCAGCGGCCGAATGGTTACTTGTCA GTACCGTACGAGATTTTAATAAGTCAGTCCTGGAATGATTCGCTCATGCCGGAATCCTAC TCAGGTGGTTTGGTGATCTATCTTGTTGTTTAACCATGCAATGGTTAGTTTTTCGTGGGA GTGTCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAAGGAACTGGTTTG TTTGCTTTAATATCTATGAGGAAGAGTTGATGTCCTTGCTTGTAGTTTCTCATGATCTGA TCTATTCGGTGTTTGCCGTTTTCAATGCTTGCTTGCGAAGAGAATCAATATATGTTCCTG AGTATCATGTTTCACCAATGACTGAGGAGGACTTTTGCTAACAGAAAAGATGAGATCTCT TTGGCTAGTTTTTGTTAAAGGGGATGGCAGCAGTAAATACCTTCGTCCTTCCTCCATGTT GGAATCAAGAAGTTAGTGTGCAGTGACGAGTGTGGACTCAAGTGTTGCAACACGTACGTA CGCATGCACCTAAGTTGCAAGCTACGCAAAGCTAACTACTGTACGTACTACAGTACAAGC TGCAGGTTGTAAAGTGGTCTGTATATCGTGTGATCGTAATTGCCGGTTGGTAAAGCTAGC ACAGTGACATTTCTTCAATTAATGACAGTTTTGTTTATCTTTATCCACCCATCTACTCCC TCCGTTCCTAAATATAAGTCTTTTAAGCGATTTCACTAAAGGACTAC
Protein Sequence (801 aa)
>BART1_0-u16377.001 801 150831_barley_pseudomolecules MLVTYPQMMEWLEGLGVEMERSDMSFSVSTQSKGGGGGCEWGNGNGISSLLAQKTNILKP SFWHMVCEILKFKNNALTYLEDHERNPDLDRNETLGQFIQSHGYSLSFQEAYLIPVCTGT WSCSSQDVLSLSAFLVLSFCRNHGLLQLFRHSQLPTVKPSSQSYVNKVKGELESIGCRIK TSCRVKSVSSLDGAAGYRVLENDGSVETYDSVIFGVHASNALKLLGAEASHHERRILGAC QYVQRDIYLHCDQNLMPRKSAAWSAWNFLGTTSRGFSITYWLNQIQKFESGRPFLVTLNP PCVPDHVLLKWNTSLPVPSVAAAKAYLQLDQIQGKRGIWFCGAYQGHGFHEDGLKSGKAA AQGLLGKKCELLLNPKNMIPSWIEAGARLLVARFFNQYISIGNLILVEEGGSVFSFGKAC DKCRVKSVIQVHDPLFYWKVAIEGGMGLAESYIDGCFSVLDKREGLLNLILILIANRDER RNRRIARKGFWLSPFHVIAQLAYAKHFLRQATRKNTATQTRRNISEHYDLSNDFFSLFLD KSMTYSCAVFKENESLEAAQQRKLSLLINKAKVKREHHVLDIGSGWGSLAIETVKQTGCK YTGVTLSAEQHKYAERKVREAGLEDRINFLLCDYRKIPPFKYDAIISCGMIEHVGHEYMD EFFACCESYLAEDGILVLQFISVPEERYEQYRKRPDFIKEYIFPGGCLPSLARIMSAMTA SSRFCIEHVENIGPNYYTTLMHWRDNFMANRDQVLALGFDERFLRIWEYYLIFSAAGFKS RAIGDYQVVFSRPGNRRLGQP