- Transcript BART1_0-u13191.020
- Transcript IDBART1_0-u13191.020
- Gene IDBART1_0-u13191
Barley RTD
Exon Structure of BART1_0-u13191.020
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614350161 | 614350096 | + |
| chr2H | 2 | 614350541 | 614350292 | + |
| chr2H | 3 | 614351485 | 614351389 | + |
| chr2H | 4 | 614354844 | 614354764 | + |
| chr2H | 5 | 614355033 | 614354977 | + |
| chr2H | 6 | 614355353 | 614355222 | + |
| chr2H | 7 | 614355517 | 614355431 | + |
| chr2H | 8 | 614355844 | 614355736 | + |
| chr2H | 9 | 614356065 | 614355929 | + |
| chr2H | 10 | 614356910 | 614356806 | + |
| chr2H | 11 | 614357771 | 614357683 | + |
| chr2H | 12 | 614357971 | 614357869 | + |
| chr2H | 13 | 614358168 | 614358046 | + |
| chr2H | 14 | 614358861 | 614358722 | + |
| chr2H | 15 | 614359582 | 614359050 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.47469 | 0.468341 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.000000146245 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.749085 | 0 | 0 |
| morex | RAC | 0 | 0.219832 | 0.233624 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41530.1 | +3 | 0.0 | 600 | 286/343 (83%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+3 | 1e-137 | 435 | 229/411 (56%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.1.p | +3 | 0.0 | 769 | 393/485 (81%) | pacid=32809296 transcript=Bradi5g14307.1 locus=Bradi5g14307 ID=Bradi5g14307.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2109 bp)
>BART1_0-u13191.020 2109 150831_barley_pseudomolecules CAAGTAGGTACCTATTTTTATACTGCACCGGAGGTAGAACAGAAGTGGCCACAGATAAAC GAAAAGGTTGACATGTACAGTGCGGGTGTTATATTCTTTGAGCTTTGGCATCCATTTTCA ACAGCAATGGAAAGACATCTTGTTCTCACTGATCTTAAACAGAAAGGCGAGTCTCCAATA TCATGGTCAACACAATTTCCTGGTCAATCAAATCTATTAAGACGCTTGCTGTGTCCAAGC CCGTCCGAACGTCCATCTGCGATTGAGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAG GACGAGTGGTTAAATGTGGAAAGACAGTGAAGATCCTAACGCAAGGAGGAGAGATGCTAG AACTTTGCTATGAGCTGCGAACACCATTTGTTATGAACGTTGCTGCTAACCAGTTATCAT CATGTAAGCGTTATGAAATATCATGGGTTCACAGAAGAGCAGTTGGCCATTCAACTCCTT ATCGTTTTCTTCAGGGTGATTTTGACATCATTGGAGGTTCTTCACCAATAACACAGGCCG AAGTTATCAAGGTAGCTTTGGACCTTGTGAGACGTTTTTACAATTCGAAGGCAATAGTTA TTCGACTGAATCATAGCAAACTCGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAGG AACGAAGACAGAATGTTGCTGAGTTTCTATCTTCTACTCTTGTTCAATATTGCCCAAACA AGGCGGATCGTAAGTCACAGTGGAGTTTCATTCGAGGGCAACTATTACAGGATCTTCGTC TTTCTGAAGAAGTTGTTGAAAAGCTACATAAAGCAGATCAGCGGTTTTGTGGATCTGCAG ATCTAGTACTTGCTAGATTAAGAGGGACCTTTTTCTATGATAAATCTGCTTGCAAGGCTC TTGATGATCTCTCCACATTCCTTAAATGTTTGAGGGTATGGTCAGTTGAAGAACATATTG CTATTGATGTACTTATGCCTCCTTCAGACTATTACTACTCAGATATGTTTTTTCAGATCT ACTCAAAAGAAGGCAGTCCTGCGTCGAGTTCCCATGAAAAGTTGCTTGCTGTTGGCGGGC GATATGATATGTTGATGGAAAATGCTTGGGATAAGACACATAAAACCAAACCCCCGGGTG CTGTTGGTGTGAGCATTGCACTTGAGAAATTCCTACCTAATAATCCTTCATCTGACGTTG GGTTGCCAAGGATTGAAAATAGCATCAGTGTACTAGTCTGTTCAAAGGGCGGCGGCGGAC TCTTAAACGAACGCATGGAACTTGTTGCAGAACTTTGGGAAGCTAACATAAAGGCCCAGT TTGTTCCTCAGGAAGACCCAAGTCTTCAAGAACAATACGAGTACGCCAGTGATCATGACA TCAAATGCCTTGTGTTTATCACTGAAGCAGGTCTTGCGCAAACTGATCTTGTGAAGGTTA GACATCTCGATGCAAGAAAGGAGAAAGATGTTGAAAAGGAAGAAATTGTGAAGTTCCTGT CTGAAGCAATATCTTTACAGTTCAAAAATCCTACAATCTGGAGCTGATTGGCAGTCTGCT CCTAAGTGAATTTCAGGTGAAAGCAGTGTTGCCTTGCCAAACATTTTCACCTACACCAAA TTGCAGGGTGACTGGTGGCTTTGTTCAATCTTGGTTATCCTGGAGCATTGGCCAAGATTG ATGGCTTGGTGTAATCCTGATTGTCCTGGAGCAGTATTGCGGTGAATGCAAGCTGACGGG TAGCTGTTTTAAGGCAATCTTGGCTGCTATTATGTGGATAGCTAGTTGGTGCAGAGTTAC TTCTGCGATGTGATCATGGAGCTGGAATGCTGCACAACGTTCTTGTTGATAGTGGAACGG CTGTGCTACAGGTTCACCCAGTTATGCCCTTTGCAAAAAAATTTGCTTCAAATTCTTCTA CAAGGCAGTCTTTTGCATAGTTCAAATTGTTTACGATCATGTACAGGCCAATTTTCCTTC TTTGATGCTCGTAGGAAATGCCCAGTTTTGCAACTGGCTTAGCTTGGAGAAGACAAGCCA ATGCAGTTTTGCTACAATACCGGTCAAAGTAGAATGTATGTAATCTGTTATCTGTGCACA GTGCGAAAG
Protein Sequence (397 aa)
>BART1_0-u13191.020 397 150831_barley_pseudomolecules MLELCYELRTPFVMNVAANQLSSCKRYEISWVHRRAVGHSTPYRFLQGDFDIIGGSSPIT QAEVIKVALDLVRRFYNSKAIVIRLNHSKLAEAVCSWAGVPQERRQNVAEFLSSTLVQYC PNKADRKSQWSFIRGQLLQDLRLSEEVVEKLHKADQRFCGSADLVLARLRGTFFYDKSAC KALDDLSTFLKCLRVWSVEEHIAIDVLMPPSDYYYSDMFFQIYSKEGSPASSSHEKLLAV GGRYDMLMENAWDKTHKTKPPGAVGVSIALEKFLPNNPSSDVGLPRIENSISVLVCSKGG GGLLNERMELVAELWEANIKAQFVPQEDPSLQEQYEYASDHDIKCLVFITEAGLAQTDLV KVRHLDARKEKDVEKEEIVKFLSEAISLQFKNPTIWS