Gene Data
Barley RTD
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Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU2Hr1G08493098.5++26247-401Containing




Transcripts from Gene BART1_0-u13191

TranscriptLength(bp)Description
BART1_0-u13191.00152525252 bp MSTRG.13191.1 MSTRG.13191
BART1_0-u13191.00253975397 bp MSTRG.13191.2 MSTRG.13191
BART1_0-u13191.00351895189 bp MSTRG.13191.3 MSTRG.13191
BART1_0-u13191.00450695069 bp MSTRG.13191.4 MSTRG.13191
BART1_0-u13191.00547914791 bp MSTRG.13191.5 MSTRG.13191
BART1_0-u13191.00648754875 bp MSTRG.13191.6 MSTRG.13191
BART1_0-u13191.00748584858 bp MSTRG.13191.7 MSTRG.13191
BART1_0-u13191.00844594459 bp MSTRG.13191.8 MSTRG.13191
BART1_0-u13191.00948184818 bp MSTRG.13191.9 MSTRG.13191
BART1_0-u13191.01049624962 bp MSTRG.13191.10 MSTRG.13191
BART1_0-u13191.01145044504 bp MSTRG.13191.11 MSTRG.13191
BART1_0-u13191.01246664666 bp MSTRG.13191.12 MSTRG.13191
BART1_0-u13191.01343014301 bp MSTRG.13191.13 MSTRG.13191
BART1_0-u13191.01443844384 bp MSTRG.13191.14 MSTRG.13191
BART1_0-u13191.01546524652 bp MSTRG.13191.15 MSTRG.13191
BART1_0-u13191.01643244324 bp MSTRG.13191.16 MSTRG.13191
BART1_0-u13191.01742164216 bp MSTRG.13191.17 MSTRG.13191
BART1_0-u13191.01833593359 bp MSTRG.13191.18 MSTRG.13191
BART1_0-u13191.01930383038 bp MSTRG.13191.19 MSTRG.13191
BART1_0-u13191.02021092109 bp MSTRG.13191.20 MSTRG.13191
BART1_0-u13191.02115961596 bp MSTRG.13191.21 MSTRG.13191
BART1_0-u13191.02212891289 bp MSTRG.13191.22 MSTRG.13191



Exon Structure of BART1_0-u13191


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os04g41510.1 +3 0.0 1358 679/846 (80%) protein|serine/threonine-protein kinase GCN2, putative, expressed
TAIR PP10 AT3G59410 @ ARAPORT
AT3G59410.1 @ TAIR		 +3 0.0 1170 640/1247 (51%) Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241
BRACH PP3 Bradi5g14307.1.p +3 0.0 2222 1115/1250 (89%) pacid=32809296 transcript=Bradi5g14307.1 locus=Bradi5g14307 ID=Bradi5g14307.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0060089molecular transducer activity
GO:0018209peptidyl-serine modification
GO:0022626cytosolic ribosome
GO:1901561response to benomyl
GO:0034198cellular response to amino acid starvation
GO:0015074DNA integration
GO:0004386helicase activity
GO:0006468protein phosphorylation
GO:0009635response to herbicide
GO:0006521regulation of cellular amino acid metabolic process
GO:1990451cellular stress response to acidic pH
GO:0005524ATP binding
GO:0032543mitochondrial translation
GO:0070301cellular response to hydrogen peroxide
GO:0051726regulation of cell cycle
GO:0071417cellular response to organonitrogen compound
GO:0016757transferase activity, transferring glycosyl groups
GO:0004672protein kinase activity
GO:0000049tRNA binding
GO:0043558regulation of translational initiation in response to stress
GO:0006412translation
GO:0004821histidine-tRNA ligase activity
GO:0045182translation regulator activity
GO:0006427histidyl-tRNA aminoacylation
GO:0005737cytoplasm
GO:0005739mitochondrion
GO:0016021integral component of membrane
GO:0071407cellular response to organic cyclic compound



Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons