- Transcript BART1_0-u13191.009
- Transcript IDBART1_0-u13191.009
- Gene IDBART1_0-u13191
Barley RTD
Exon Structure of BART1_0-u13191.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614334067 | 614333583 | + |
| chr2H | 2 | 614334855 | 614334784 | + |
| chr2H | 3 | 614335005 | 614334946 | + |
| chr2H | 4 | 614335184 | 614335079 | + |
| chr2H | 5 | 614336189 | 614336085 | + |
| chr2H | 6 | 614337611 | 614337144 | + |
| chr2H | 7 | 614338348 | 614338217 | + |
| chr2H | 8 | 614338544 | 614338458 | + |
| chr2H | 9 | 614338728 | 614338642 | + |
| chr2H | 10 | 614338934 | 614338838 | + |
| chr2H | 11 | 614339597 | 614339480 | + |
| chr2H | 12 | 614348172 | 614348118 | + |
| chr2H | 13 | 614348432 | 614348310 | + |
| chr2H | 14 | 614349221 | 614349034 | + |
| chr2H | 15 | 614350161 | 614350013 | + |
| chr2H | 16 | 614350541 | 614350292 | + |
| chr2H | 17 | 614350712 | 614350635 | + |
| chr2H | 18 | 614351269 | 614351011 | + |
| chr2H | 19 | 614351485 | 614351389 | + |
| chr2H | 20 | 614354844 | 614354764 | + |
| chr2H | 21 | 614355033 | 614354977 | + |
| chr2H | 22 | 614355353 | 614355222 | + |
| chr2H | 23 | 614355517 | 614355431 | + |
| chr2H | 24 | 614355844 | 614355736 | + |
| chr2H | 25 | 614356065 | 614355929 | + |
| chr2H | 26 | 614356910 | 614356806 | + |
| chr2H | 27 | 614357771 | 614357683 | + |
| chr2H | 28 | 614357971 | 614357869 | + |
| chr2H | 29 | 614358168 | 614358046 | + |
| chr2H | 30 | 614358962 | 614358722 | + |
| chr2H | 31 | 614359587 | 614359050 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.469835 | 0.00000000234597 | 2.06082 |
| morex | ETI | 0.204093 | 1.04043 | 0.459622 |
| morex | LEA | 0.00764229 | 0 | 0.000000109482 |
| morex | EPI | 0.854645 | 0.364069 | 1.15033 |
| morex | ROO | 0 | 0.0000000257921 | 0 |
| morex | ROO2 | 0.011394 | 0.334556 | 0.000611089 |
| morex | NOD | 0 | 0.389411 | 0.523094 |
| morex | RAC | 0 | 0.109406 | 0.0193419 |
| morex | INF1 | 0.0000987471 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.0732457 |
| morex | CAR5 | 0.00349807 | 0 | 1.55352 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.394614 | 0.0000000176078 | 0.800075 |
| morex | LOD | 0 | 1.00524 | 0.360755 |
| morex | PAL | 0 | 0.363492 | 0.448069 |
| morex | SEN | 2.04801 | 2.3378 | 2.29047 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41510.1 | +1 | 0.0 | 713 | 379/512 (74%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.2 @ TAIR |
+2 | 0.0 | 821 | 426/775 (55%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1265 |
| BRACH PP3 | Bradi5g14307.1.p | +2 | 0.0 | 1379 | 671/763 (88%) | pacid=32809296 transcript=Bradi5g14307.1 locus=Bradi5g14307 ID=Bradi5g14307.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4818 bp)
>BART1_0-u13191.009 4818 150831_barley_pseudomolecules GGTGGCGGCGGTGTGGAGGAGACAGTGAGACACTGGGTGGCGGCTAGAGCAGAGCAGGGG AAGGGAACCGAAGCTAGTCGCAAAGGTCTCGCCGCCTCTGCGCTGACTGCATCGAGATAA ACAGTCTGGACCCCGGTCACGACGCGCGCAGCCCCTTCCACTCCATCGCTCCATTCCACG TCAAAACCTCCTCCCCGGACTCGAGTCAGAGAAACCCAAACGCAGATCCCCTCCTCGTCA GATCATCCCTCCCGCACCCGGAACATCCAATCCGATCAACCCCGTCTCCCCGAGGCACCA AATCGCCGCCGCCGCTGCAGCCACCCCCTCTTGTCCGGCGCTGCCTCCCGCGCGCGCTCC GCTCCGATGGGGCACAGCGCGAGGAGGAAGAAGAAGAAGGGCGGCGCTGGGCGCAAGGCG GCCAAGGACCACGCCGCGCAGCTCGAGGGCGACCAGACCGCGCTCACGGACGAGCTCACG GCGCTGGCTGCAATTTTTCTTGAGGACTTCAAAATAACTTCACAATCACCTAACACCCGA TTTAGCATATGTATCAGGCCTTACTCTGACGGCATGGGCTTTGGAGATTTAAATGTTTCG GCTATTCTTGATGTAATTTGCTTTGCTGGTTACCCCCACAAGTGCCCAAAGTTGCGAATC ATACCCGAGAAAAACTTGTCTAAAGAAGATGCTGATCGGTTACTTTCCCTTCTTTCTGAC CAGGCAAACATTTATTCCAGAGAAGGGCGTGTTATGATTTTCGATTTGGTAGAGGCTGCC CAAGAATTCCTTTCAGAAATTGCTCCAGCTGCTGATTCATCAAGTACTGCTCCTCACTTA GGTTCAAGTACAGTACAGGAAACAACTGATGCAGATGTGAAAGCTACCCTTGACAGCAGT CCTTACCCTGGAATCTTTTACATCTACAATTCATTCGATTTGTATAGTCAACTATATGAT GATAATAGTTGGCAAAGGCAAGGTTTCGATCCTACAACTGATAATGCCAACAAAAATATT GGATCTCAAGTCAATTCAAATGTTATAAGCAAGAGGAAAACAGTGAATGAAAAATCCCGT TTTTCAGCTGATAAGGTCAATGCTGCAAAAAGTTCATCTCAGGATAATTCTGAACAGCAG CATGCCATGAAGCTGGGTGTTGTACGGGAGGTAGTTCCAAGTTTACCTGTTGTTGCAGAG GAAACTGATAATGACAGCAAAACTTTGTCCACAAGCAACGGAGGAGGTATGGCAGATACT CCAGAGAGGAGTTTCAGCAGTGTACATGAATCCGAGGACTCTGGCCTTGCAGATGAAGGT TGGAATGATGAAGATTCTGCTCCAGACTCTGGCTCTTCAAATGCACCATCTCATGTTTCA GACATGTTTGATGATGCTTCGCAAAATAAGAAAAGGGATTTAATTCTGGTACACTTGCTT CGGTTAGCCTGTGCGTCAAAAGATTCTCTTTCAGCTGCTTTGCCAGTAATATCATTGGAG TTATGCAACATAGGGGTTCTTTCTGAATGGGCTAAGCAATTAATTTCTGAATCTCCTGCT GTTTTTGGGGAAACTTTCGATCATGTTTTTGGGCAACAAATGATATCTTCGGAGTGCTCT CTATTTTGGAGGGCTGACAATTCATCGTCTAGGCCAAACTCCCGTTATTTGAATGATTTT GAAGAGCTCCGTTCACTTGGTCAGGGGGGCTTTGGCCGTGTGGCATTGTGTAAAAACAAG CTCGATGGACGCCAATATGCTGTAAAGAAGATACGCCTCAAGGATAGAAGTCCTCAAGTG AATGAAAAGATTCTCAGAGAAGTTGCCACACTTTCACGACTGCAGCATCAGCATGTTGTT CGTTACTACCAGCGGGGGGTCACGCACTGCTGAGAGCTCTATGTATAGTTTCGACGAGAT CAGCTTATCAGATGCAGGTGCTGGAAATAAGCAGGAATGCACGTACTTGTACATCCAAAT GGAGTATTGTCCTAGAACCCTGCGACAGGACTTTGAGACATATAGTTCATCTTTCAATGT CGACCATGCATGGCACTTATTTCGACAAATCGTGGAAGGCCTAGCACATGTTCATAGTCA AGGCATCATACACCGGGACTTGACACCTAGCAACATATTTTTTGATGTGCGCAACGATAT CAAAATTGGAGATTTTGGTCTTGCCAAATTTCTAAAGCTGGAGCAGCTGGATCATGACCA ATATATTCCTACTGAAGGAATGGGCGTTTCAATGGATGGAACAGGTCAAGTAGGTACCTA TTTTTATACTGCACCGGAGGTAGAACAGAAGTGGCCACAGATAAACGAAAAGGTTGACAT GTACAGTGCGGGTGTTATATTCTTTGAGCTTTGGCATCCATTTTCAACAGCAATGGAAAG ACATCTTGTTCTCACTGATCTTAAACAGAAAGGCGAGTCTCCAATATCATGGTCAACACA ATTTCCTGGTCAATCAAATCTATTAAGACGCTTGCTGTGTCCAAGCCCGTCCGAACGTCC ATCTGCGATTGAGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAGGACGAGTGGTTAAA TGTAACACGCACTGGAAGCACTGGACTGCGTGTCTTTTTGTATTAAGAAGAGCACCGAAG CGGCGCAAAATTTACAACTGATGTACTTAGAATGATACAGACACCAGAAGACACTTACGT TTATGATCGAGTTATATCTACAATATTTAATGAAGATCGACTGGTCGCCAAAATGCAATG TCAGCATGAAAGCAGTAAAAAATCCACTTATAAAAATGATAACAGTGAACTCTTGGATTC CATTATTGAGGTTAGCAAAGAGGTTTTTAAGCGACATTGTGCTAAAAGGTTCCAGATAAC ACCCTTGCATACATTGGATGGGAAATTTACTGAAAATAGTGGAAAGACAGTGAAGATCCT AACGCAAGGAGGAGAGATGCTAGAACTTTGCTATGAGCTGCGAACACCATTTGTTATGAA CGTTGCTGCTAACCAGTTATCATCATGTAAGCGTTATGAAATATCATGGGTTCACAGAAG AGCAGTTGGCCATTCAACTCCTTATCGTTTTCTTCAGGGTGATTTTGACATCATTGGAGG TTCTTCACCAATAACACAGGCCGAAGTTATCAAGGTAGCTTTGGACCTTGTGAGACGTTT TTACAATTCGAAGGCAATAGTTATTCGACTGAATCATAGCAAACTCGCTGAAGCAGTTTG TTCCTGGGCAGGAGTTCCTCAGGAACGAAGACAGAATGTTGCTGAGTTTCTATCTTCTAC TCTTGTTCAATATTGCCCAAACAAGGCGGATCGTAAGTCACAGTGGAGTTTCATTCGAGG GCAACTATTACAGGATCTTCGTCTTTCTGAAGAAGTTGTTGAAAAGCTACATAAAGCAGA TCAGCGGTTTTGTGGATCTGCAGATCTAGTACTTGCTAGATTAAGAGGGACCTTTTTCTA TGATAAATCTGCTTGCAAGGCTCTTGATGATCTCTCCACATTCCTTAAATGTTTGAGGGT ATGGTCAGTTGAAGAACATATTGCTATTGATGTACTTATGCCTCCTTCAGACTATTACTA CTCAGATATGTTTTTTCAGATCTACTCAAAAGAAGGCAGTCCTGCGTCGAGTTCCCATGA AAAGTTGCTTGCTGTTGGCGGGCGATATGATATGTTGATGGAAAATGCTTGGGATAAGAC ACATAAAACCAAACCCCCGGGTGCTGTTGGTGTGAGCATTGCACTTGAGAAATTCCTACC TAATAATCCTTCATCTGACGTTGGGTTGCCAAGGATTGAAAATAGCATCAGTGTACTAGT CTGTTCAAAGGGCGGCGGCGGACTCTTAAACGAACGCATGGAACTTGTTGCAGAACTTTG GGAAGCTAACATAAAGGCCCAGTTTGTTCCTCAGGAAGACCCAAGTCTTCAAGAACAATA CGAGTACGCCAGTGATCATGACATCAAATGCCTTGTGTTTATCACTGAAGCAGGTCTTGC GCAAACTGATCTTGTGAAGGTTAGACATCTCGATGCAAGAAAGGAGAAAGATGTTGAAAA GGAAGAAATTGTGAAGTTCCTGTCTGAAGCAATATCTTTACAGTTCAAAAATCCTACAAT CTGGAGCTGATTGGCAGTCTGCTCCTAAGTGAATTTCAGGTTTGCTATTCCAAATGGTCG ATCAATATCAGACTTTTTATCTACCTATCCTGGATATGACGAAAAAGACCTGTCCTGGAT ATAATCTTTCCTATGGCCGGGTGAAAGCAGTGTTGCCTTGCCAAACATTTTCACCTACAC CAAATTGCAGGGTGACTGGTGGCTTTGTTCAATCTTGGTTATCCTGGAGCATTGGCCAAG ATTGATGGCTTGGTGTAATCCTGATTGTCCTGGAGCAGTATTGCGGTGAATGCAAGCTGA CGGGTAGCTGTTTTAAGGCAATCTTGGCTGCTATTATGTGGATAGCTAGTTGGTGCAGAG TTACTTCTGCGATGTGATCATGGAGCTGGAATGCTGCACAACGTTCTTGTTGATAGTGGA ACGGCTGTGCTACAGGTTCACCCAGTTATGCCCTTTGCAAAAAAATTTGCTTCAAATTCT TCTACAAGGCAGTCTTTTGCATAGTTCAAATTGTTTACGATCATGTACAGGCCAATTTTC CTTCTTTGATGCTCGTAGGAAATGCCCAGTTTTGCAACTGGCTTAGCTTGGAGAAGACAA GCCAATGCAGTTTTGCTACAATACCGGTCAAAGTAGAATGTATGTAATCTGTTATCTGTG CACAGTGCGAAAGAGCAT
Protein Sequence (508 aa)
>BART1_0-u13191.009 508 150831_barley_pseudomolecules MGHSARRKKKKGGAGRKAAKDHAAQLEGDQTALTDELTALAAIFLEDFKITSQSPNTRFS ICIRPYSDGMGFGDLNVSAILDVICFAGYPHKCPKLRIIPEKNLSKEDADRLLSLLSDQA NIYSREGRVMIFDLVEAAQEFLSEIAPAADSSSTAPHLGSSTVQETTDADVKATLDSSPY PGIFYIYNSFDLYSQLYDDNSWQRQGFDPTTDNANKNIGSQVNSNVISKRKTVNEKSRFS ADKVNAAKSSSQDNSEQQHAMKLGVVREVVPSLPVVAEETDNDSKTLSTSNGGGMADTPE RSFSSVHESEDSGLADEGWNDEDSAPDSGSSNAPSHVSDMFDDASQNKKRDLILVHLLRL ACASKDSLSAALPVISLELCNIGVLSEWAKQLISESPAVFGETFDHVFGQQMISSECSLF WRADNSSSRPNSRYLNDFEELRSLGQGGFGRVALCKNKLDGRQYAVKKIRLKDRSPQVNE KILREVATLSRLQHQHVVRYYQRGVTHC