- Transcript BART1_0-u13191.007
- Transcript IDBART1_0-u13191.007
- Gene IDBART1_0-u13191
Barley RTD
Exon Structure of BART1_0-u13191.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614334067 | 614333578 | + |
| chr2H | 2 | 614334855 | 614334784 | + |
| chr2H | 3 | 614335005 | 614334946 | + |
| chr2H | 4 | 614335184 | 614335079 | + |
| chr2H | 5 | 614336189 | 614336085 | + |
| chr2H | 6 | 614337611 | 614337144 | + |
| chr2H | 7 | 614338348 | 614338217 | + |
| chr2H | 8 | 614338544 | 614338458 | + |
| chr2H | 9 | 614338728 | 614338642 | + |
| chr2H | 10 | 614338934 | 614338838 | + |
| chr2H | 11 | 614339597 | 614339480 | + |
| chr2H | 12 | 614348172 | 614348118 | + |
| chr2H | 13 | 614348432 | 614348266 | + |
| chr2H | 14 | 614349221 | 614349034 | + |
| chr2H | 15 | 614350161 | 614350013 | + |
| chr2H | 16 | 614350541 | 614350292 | + |
| chr2H | 17 | 614351269 | 614351011 | + |
| chr2H | 18 | 614351485 | 614351389 | + |
| chr2H | 19 | 614354844 | 614354764 | + |
| chr2H | 20 | 614355033 | 614354977 | + |
| chr2H | 21 | 614355353 | 614355319 | + |
| chr2H | 22 | 614355517 | 614355431 | + |
| chr2H | 23 | 614355844 | 614355736 | + |
| chr2H | 24 | 614356065 | 614355929 | + |
| chr2H | 25 | 614356910 | 614356806 | + |
| chr2H | 26 | 614357771 | 614357683 | + |
| chr2H | 27 | 614357971 | 614357869 | + |
| chr2H | 28 | 614358168 | 614358046 | + |
| chr2H | 29 | 614358861 | 614358722 | + |
| chr2H | 30 | 614359854 | 614359050 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.0000164393 | 1.70088 | 1.96504 |
| morex | LEA | 0 | 0.0000140609 | 0.66808 |
| morex | EPI | 0.488052 | 0.687622 | 0.646428 |
| morex | ROO | 0 | 0.430372 | 0.124896 |
| morex | ROO2 | 0 | 0.62503 | 0.42484 |
| morex | NOD | 0.329732 | 0.641681 | 0 |
| morex | RAC | 0.310511 | 0 | 0.485666 |
| morex | INF1 | 0.622169 | 1.12005 | 0 |
| morex | INF2 | 2.38612 | 3.2246 | 2.23619 |
| morex | CAR5 | 2.08043 | 1.59646 | 0 |
| morex | CAR15 | 0 | 0.703109 | 0.521763 |
| morex | LEM | 0.450218 | 0.35902 | 0.504483 |
| morex | LOD | 0.398443 | 0 | 0.253363 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.872542 | 0.228432 | 0.512345 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41510.1 | +3 | 0.0 | 1358 | 679/846 (80%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+3 | 0.0 | 842 | 462/913 (51%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.5.p | +3 | 0.0 | 1610 | 810/918 (88%) | pacid=32809300 transcript=Bradi5g14307.5 locus=Bradi5g14307 ID=Bradi5g14307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4858 bp)
>BART1_0-u13191.007 4858 150831_barley_pseudomolecules GAGGGGGTGGCGGCGGTGTGGAGGAGACAGTGAGACACTGGGTGGCGGCTAGAGCAGAGC AGGGGAAGGGAACCGAAGCTAGTCGCAAAGGTCTCGCCGCCTCTGCGCTGACTGCATCGA GATAAACAGTCTGGACCCCGGTCACGACGCGCGCAGCCCCTTCCACTCCATCGCTCCATT CCACGTCAAAACCTCCTCCCCGGACTCGAGTCAGAGAAACCCAAACGCAGATCCCCTCCT CGTCAGATCATCCCTCCCGCACCCGGAACATCCAATCCGATCAACCCCGTCTCCCCGAGG CACCAAATCGCCGCCGCCGCTGCAGCCACCCCCTCTTGTCCGGCGCTGCCTCCCGCGCGC GCTCCGCTCCGATGGGGCACAGCGCGAGGAGGAAGAAGAAGAAGGGCGGCGCTGGGCGCA AGGCGGCCAAGGACCACGCCGCGCAGCTCGAGGGCGACCAGACCGCGCTCACGGACGAGC TCACGGCGCTGGCTGCAATTTTTCTTGAGGACTTCAAAATAACTTCACAATCACCTAACA CCCGATTTAGCATATGTATCAGGCCTTACTCTGACGGCATGGGCTTTGGAGATTTAAATG TTTCGGCTATTCTTGATGTAATTTGCTTTGCTGGTTACCCCCACAAGTGCCCAAAGTTGC GAATCATACCCGAGAAAAACTTGTCTAAAGAAGATGCTGATCGGTTACTTTCCCTTCTTT CTGACCAGGCAAACATTTATTCCAGAGAAGGGCGTGTTATGATTTTCGATTTGGTAGAGG CTGCCCAAGAATTCCTTTCAGAAATTGCTCCAGCTGCTGATTCATCAAGTACTGCTCCTC ACTTAGGTTCAAGTACAGTACAGGAAACAACTGATGCAGATGTGAAAGCTACCCTTGACA GCAGTCCTTACCCTGGAATCTTTTACATCTACAATTCATTCGATTTGTATAGTCAACTAT ATGATGATAATAGTTGGCAAAGGCAAGGTTTCGATCCTACAACTGATAATGCCAACAAAA ATATTGGATCTCAAGTCAATTCAAATGTTATAAGCAAGAGGAAAACAGTGAATGAAAAAT CCCGTTTTTCAGCTGATAAGGTCAATGCTGCAAAAAGTTCATCTCAGGATAATTCTGAAC AGCAGCATGCCATGAAGCTGGGTGTTGTACGGGAGGTAGTTCCAAGTTTACCTGTTGTTG CAGAGGAAACTGATAATGACAGCAAAACTTTGTCCACAAGCAACGGAGGAGGTATGGCAG ATACTCCAGAGAGGAGTTTCAGCAGTGTACATGAATCCGAGGACTCTGGCCTTGCAGATG AAGGTTGGAATGATGAAGATTCTGCTCCAGACTCTGGCTCTTCAAATGCACCATCTCATG TTTCAGACATGTTTGATGATGCTTCGCAAAATAAGAAAAGGGATTTAATTCTGGTACACT TGCTTCGGTTAGCCTGTGCGTCAAAAGATTCTCTTTCAGCTGCTTTGCCAGTAATATCAT TGGAGTTATGCAACATAGGGGTTCTTTCTGAATGGGCTAAGCAATTAATTTCTGAATCTC CTGCTGTTTTTGGGGAAACTTTCGATCATGTTTTTGGGCAACAAATGATATCTTCGGAGT GCTCTCTATTTTGGAGGGCTGACAATTCATCGTCTAGGCCAAACTCCCGTTATTTGAATG ATTTTGAAGAGCTCCGTTCACTTGGTCAGGGGGGCTTTGGCCGTGTGGCATTGTGTAAAA ACAAGCTCGATGGACGCCAATATGCTGTAAAGAAGATACGCCTCAAGGATAGAAGTCCTC AAGTGAATGAAAAGATTCTCAGAGAAGTTGCCACACTTTCACGACTGCAGCATCAGCATG TTGTTCGTTACTACCAGGCATGGGTTGAAACTGAATATGGTCAACATCATGTTGTGAACA GCGGGGGGTCACGCACTGCTGAGAGCTCTATGTATAGTTTCGACGAGATCAGCTTATCAG ATGCAGGTGCTGGAAATAAGCAGGAATGCACGTACTTGTACATCCAAATGGAGTATTGTC CTAGAACCCTGCGACAGGACTTTGAGACATATAGTTCATCTTTCAATGTCGACCATGCAT GGCACTTATTTCGACAAATCGTGGAAGGCCTAGCACATGTTCATAGTCAAGGCATCATAC ACCGGGACTTGACACCTAGCAACATATTTTTTGATGTGCGCAACGATATCAAAATTGGAG ATTTTGGTCTTGCCAAATTTCTAAAGCTGGAGCAGCTGGATCATGACCAATATATTCCTA CTGAAGGAATGGGCGTTTCAATGGATGGAACAGGTCAAGTAGGTACCTATTTTTATACTG CACCGGAGGTAGAACAGAAGTGGCCACAGATAAACGAAAAGGTTGACATGTACAGTGCGG GTGTTATATTCTTTGAGCTTTGGCATCCATTTTCAACAGCAATGGAAAGACATCTTGTTC TCACTGATCTTAAACAGAAAGGCGAGTCTCCAATATCATGGTCAACACAATTTCCTGGTC AATCAAATCTATTAAGACGCTTGCTGTGTCCAAGCCCGTCCGAACGTCCATCTGCGATTG AGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAGGACGAGTGGTTAAATGATGTACTTA GAATGATACAGACACCAGAAGACACTTACGTTTATGATCGAGTTATATCTACAATATTTA ATGAAGATCGACTGGTCGCCAAAATGCAATGTCAGCATGAAAGCAGTAAAAAATCCACTT ATAAAAATGATAACAGTGAACTCTTGGATTCCATTATTGAGGTTAGCAAAGAGGTTTTTA AGCGACATTGTGCTAAAAGGTTCCAGATAACACCCTTGCATACATTGGATGGGAAATTTA CTGAAAATAGTGGAAAGACAGTGAAGATCCTAACGCAAGGAGGAGAGATGCTAGAACTTT GCTATGAGCTGCGAACACCATTTGTTATGAACGTTGCTGCTAACCAGTTATCATCATGTA AGCGTTATGAAATATCATGGGTTCACAGAAGAGCAGTTGGCCATTCAACTCCTTATCGTT TTCTTCAGGGTGATTTTGACATCATTGGAGGTTCTTCACCAATAACACAGGCCGAAGTTA TCAAGGAGTTCCTCAGGAACGAAGACAGAATGTTGCTGAGTTTCTATCTTCTACTCTTGT TCAATATTGCCCAAACAAGGCGGATCGTAAGTCACAGTGGAGTTTCATTCGAGGGCAACT ATTACAGGATCTTCGTCTTTCTGAAGAAGTTGTTGAAAAGCTACATAAAGCAGATCAGCG GTTTTGTGGATCTGCAGATCTAGTACTTGCTAGATTAAGAGGGACCTTTTTCTATGATAA ATCTGCTTGCAAGGCTCTTGATGATCTCTCCACATTCCTTAAATGTTTGAGGGTATGGTC AGTTGAAGAACATATTGCTATTGATGTACTTATGCCTCCTTCAGACTATTACTACTCAGA TATGTTTTTTCAGATCTACTCAAAAGAAGGCAGTCCTGCGTCGAGTTCCCATGAAAAGTT GCTTGCTGTTGGCGGGCGATATGATATGTTGATGGAAAATGCTTGGGATAAGACACATAA AACCAAACCCCCGGGTGCTGTTGGTGTGAGCATTGCACTTGAGAAATTCCTACCTAATAA TCCTTCATCTGACGTTGGGTTGCCAAGGATTGAAAATAGCATCAGTGTACTAGTCTGTTC AAAGGGCGGCGGCGGACTCTTAAACGAACGCATGGAACTTGTTGCAGAACTTTGGGAAGC TAACATAAAGGCCCAGTTTGTTCCTCAGGAAGACCCAAGTCTTCAAGAACAATACGAGTA CGCCAGTGATCATGACATCAAATGCCTTGTGTTTATCACTGAAGCAGGTCTTGCGCAAAC TGATCTTGTGAAGGTTAGACATCTCGATGCAAGAAAGGAGAAAGATGTTGAAAAGGAAGA AATTGTGAAGTTCCTGTCTGAAGCAATATCTTTACAGTTCAAAAATCCTACAATCTGGAG CTGATTGGCAGTCTGCTCCTAAGTGAATTTCAGGTGAAAGCAGTGTTGCCTTGCCAAACA TTTTCACCTACACCAAATTGCAGGGTGACTGGTGGCTTTGTTCAATCTTGGTTATCCTGG AGCATTGGCCAAGATTGATGGCTTGGTGTAATCCTGATTGTCCTGGAGCAGTATTGCGGT GAATGCAAGCTGACGGGTAGCTGTTTTAAGGCAATCTTGGCTGCTATTATGTGGATAGCT AGTTGGTGCAGAGTTACTTCTGCGATGTGATCATGGAGCTGGAATGCTGCACAACGTTCT TGTTGATAGTGGAACGGCTGTGCTACAGGTTCACCCAGTTATGCCCTTTGCAAAAAAATT TGCTTCAAATTCTTCTACAAGGCAGTCTTTTGCATAGTTCAAATTGTTTACGATCATGTA CAGGCCAATTTTCCTTCTTTGATGCTCGTAGGAAATGCCCAGTTTTGCAACTGGCTTAGC TTGGAGAAGACAAGCCAATGCAGTTTTGCTACAATACCGGTCAAAGTAGAATGTATGTAA TCTGTTATCTGTGCACAGTGCGAAAGAGCATCACTTGATTCAACTCCAGTGTTTCCGTCA CTGTGCGAAGTACCAACCCAGCATGAGAGGCCGGCGTCGTGACGTTGACGTTACTCTTTG CGGTTGTCACCTCCCGTTTGAGCCCTTTGTCAAACTGAACACCGCATTGATTAGGTAAAG CTAGCCACTGCAAGGACCATTCCAGTAGTTCTTGTTCTTTATTCGCACTAGACGAGCACT GCTCGCCTGCCCGCTGGAAATTCACGCCATGTACTGCGCGATGCACATGGAATGCCAC
Protein Sequence (983 aa)
>BART1_0-u13191.007 983 150831_barley_pseudomolecules MGHSARRKKKKGGAGRKAAKDHAAQLEGDQTALTDELTALAAIFLEDFKITSQSPNTRFS ICIRPYSDGMGFGDLNVSAILDVICFAGYPHKCPKLRIIPEKNLSKEDADRLLSLLSDQA NIYSREGRVMIFDLVEAAQEFLSEIAPAADSSSTAPHLGSSTVQETTDADVKATLDSSPY PGIFYIYNSFDLYSQLYDDNSWQRQGFDPTTDNANKNIGSQVNSNVISKRKTVNEKSRFS ADKVNAAKSSSQDNSEQQHAMKLGVVREVVPSLPVVAEETDNDSKTLSTSNGGGMADTPE RSFSSVHESEDSGLADEGWNDEDSAPDSGSSNAPSHVSDMFDDASQNKKRDLILVHLLRL ACASKDSLSAALPVISLELCNIGVLSEWAKQLISESPAVFGETFDHVFGQQMISSECSLF WRADNSSSRPNSRYLNDFEELRSLGQGGFGRVALCKNKLDGRQYAVKKIRLKDRSPQVNE KILREVATLSRLQHQHVVRYYQAWVETEYGQHHVVNSGGSRTAESSMYSFDEISLSDAGA GNKQECTYLYIQMEYCPRTLRQDFETYSSSFNVDHAWHLFRQIVEGLAHVHSQGIIHRDL TPSNIFFDVRNDIKIGDFGLAKFLKLEQLDHDQYIPTEGMGVSMDGTGQVGTYFYTAPEV EQKWPQINEKVDMYSAGVIFFELWHPFSTAMERHLVLTDLKQKGESPISWSTQFPGQSNL LRRLLCPSPSERPSAIELLQNDLPPRMEDEWLNDVLRMIQTPEDTYVYDRVISTIFNEDR LVAKMQCQHESSKKSTYKNDNSELLDSIIEVSKEVFKRHCAKRFQITPLHTLDGKFTENS GKTVKILTQGGEMLELCYELRTPFVMNVAANQLSSCKRYEISWVHRRAVGHSTPYRFLQG DFDIIGGSSPITQAEVIKEFLRNEDRMLLSFYLLLLFNIAQTRRIVSHSGVSFEGNYYRI FVFLKKLLKSYIKQISGFVDLQI