- Transcript BART1_0-u12609.015
- Transcript IDBART1_0-u12609.015
- Gene IDBART1_0-u12609
Barley RTD
Exon Structure of BART1_0-u12609.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 560839277 | 560838389 | - |
| chr2H | 2 | 560840111 | 560839880 | - |
| chr2H | 3 | 560841176 | 560840973 | - |
| chr2H | 4 | 560841423 | 560841263 | - |
| chr2H | 5 | 560841998 | 560841505 | - |
| chr2H | 6 | 560842181 | 560842111 | - |
| chr2H | 7 | 560842352 | 560842277 | - |
| chr2H | 8 | 560844532 | 560844336 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 6.67349 | 43.0761 | 36.1864 |
| morex | ETI | 37.6916 | 35.9643 | 46.1926 |
| morex | LEA | 24.3948 | 41.4546 | 73.674 |
| morex | EPI | 4.78244 | 18.3811 | 9.84169 |
| morex | ROO | 9.08961 | 25.5653 | 3.49638 |
| morex | ROO2 | 26.4553 | 29.3559 | 32.5574 |
| morex | NOD | 28.9338 | 43.8508 | 19.4796 |
| morex | RAC | 47.3646 | 32.0752 | 43.3904 |
| morex | INF1 | 45.8255 | 44.2794 | 44.7377 |
| morex | INF2 | 22.5624 | 21.2629 | 23.9918 |
| morex | CAR5 | 20.5891 | 21.6695 | 21.4013 |
| morex | CAR15 | 7.90372 | 8.14169 | 4.79784 |
| morex | LEM | 13.1993 | 5.95786 | 7.04384 |
| morex | LOD | 1.85329 | 1.25985 | 2.87995 |
| morex | PAL | 3.84719 | 5.41304 | 3.12306 |
| morex | SEN | 29.5134 | 46.2696 | 48.0915 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g36660.1 | +1 | 0.0 | 932 | 514/618 (83%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR |
+1 | 0.0 | 606 | 349/625 (56%) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622 |
| BRACH PP3 | Bradi3g46060.2.p | +1 | 0.0 | 853 | 471/620 (76%) | pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2324 bp)
>BART1_0-u12609.015 2324 150831_barley_pseudomolecules GCAAAGGCAAAGGCGGGCGCCACCTCCACCCACGCCACACATAGATCTCTCTCTCTCTCC CTCCATCTCTTGCTTTGCCTCTAGTCGTCGCCCAGTCGCTGCCGCACTGCTCCGGCTCGA GCTCGACGCGGGAAGGAGCAGCCCGGGCCTTCTCCAACCCTCGTGCCGCTATCGTTTGCC AGTTACTAGTTGCTAAGTGTCATTGTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTT TGTTCATCCCTGGAGCCGATTCTCCGAAGAGTTGTCAGCGAAGAAGTAGAGCGTGCTTTA GCCAAATTGGGACCTGCAGCAGCACCTGCTAGAATTGAAGGAAGGACCTCTCCCAAAAGA ATTGAGGGCCCCAATGGTAGTAACCTCCAGCTTCAGTTTCGGAGTAGGTTAGCACTCCCA CTCTTTACTGGAGGAAAAGTGGAAGGCGAGCAGGGAGCATCAATACATGTTGTGCTGTTA GATGCAAACACTGGACATGTCGTCACTTCAGGACCCCAGTCATCTGCGAAACTGGATGTT CTTGTTCTCGAGGGTGATTTTAATAAAGAGAAGGACGAGGATTGGACTGAAGAAGAATTT GAGAGCCACATTGTGAAAGAACGTGAAGGGAAGAGGCCTCTTTTAAACGGTGATATCCAT GTGACACTTAAAGAAGGCGTAGGGACCATAGGAGAGCTTATCTTCACTGACAATTCCAGC TGGATAAGGAGCAGAAAATTCAGACTTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGA GTTCGTATCAAAGAGGCGAAGACAGAGGCTTTTACTGTGAAAGATCACAGAGGAGAATTG TACAAGAAACATTACCCTCCTGCGCTTAAGGATGATGTTTGGAGACTGGAAAAGATTGGA AAGGACGGTGCATTCCACGGGAAACTAAACTCAAACGGAATCTATACAGTTGAACATTTT CTTCAACTTCTTGTTAAAGATCAACAGAAGTTAAGAAGTATCCTTGGTACTGGCATGTCA AATAAGATGTGGGAAAGTCTTGTTGAACATGCAAAAACTTGTGTTCTGAGTGGCAAACAT TATATATATTACTCGAAGGATACAGCAAGTGTTGGTGCAATATTCAATAACATATATGAG TTCACTGGTTTGATTGCTGATGATCAGTTTATTTCAACGGAAAATCTTACTGAAAACCAG AGGGTGTTTGCGGATACGTTGGTGAAGCAAGCATACGATGATTGGATCAATGTTGTAGAA TATGATGGCAAGGGATTGTTGAAATTTAAGCAGAAAAAGAAATCTGTCACAACAAGAAGT GATGTTGCAAATGTCTCTACAAGCTACACTTCTTATGATTCAGCGCACTCTCAGAAACAA TTGGCACGAGGACATGCCAATATTGAGCGATCTCTCATGAGCAGTACGACTAAAGACGAG ACAAGAATTGCATCCAACGGGAATCAAGTAGCAATATATGAAGCCAATCCTCAGGACATT TCACCAAGTATTACCATGCAATATGGCATGAGTTCATTGATCCCTGAAGGCCAGTTCAAT GGCTCTTCCATCCAAACTCAAGCATCAAGAAGCTCCAACATGCTAGCATTTGGACCTCCA CCACAGCAGCCGCATAACTTCGAATTCTCAGCATTTGGTCTGTCCATGCAATCCCCAGCT CCTAATCCTTTTGATGACTGGCCTGGACGGTTGCAGGAGAACCGCGGTGGTGTTGATGAC TGTCTGATGGAGGAGATAAGAGGGAGAAGCCATGACATGCTGGAGAATGAAGAAGAGATG CAACATATGCTGCGCATTCTTAGCGGCGGGGCAGCAGCAAACATGAATAATGTAGGTGGC TTTCCCTCCTACCCTTCTCCTGTACCGGACTTCAACTTCGTGGATGATCGTGCTCCCTCA TCCGGTAAGGCTGTTGTTGGGTGGCTTAAGATTAAGGCTGCCATGCGGTGGGGCATCTTC GTCAGGAAGAAAGCAGCTGAGAGAAGAGCTCAGCTTGTTGAGCTGGATGACTAGGGGATA CGGATGTTGGTAAGACACTTGTTTTTCTCGTCTTGTATAATTGCTTTGTTGACGCAATTA TAGTCAGGATCTCAAGCTCCAAAAGTATGAATGGACTCACGTTGGTTGTATAGGTAGCTG TTTGATGGTCATTATCTAAGTTTTGTTGGTGTTCAGAAAAACAAAACTGCTACAACATTG GCCTCTACTGTGCAAACTTATTTGTTGGAGATTGGACACTTGAAACAGGCTTTTTTTATG GGAACTAGCAGGTGATCTGCTTTTGCATTAAATGGGCAAATGAG
Protein Sequence (427 aa)
>BART1_0-u12609.015 427 150831_barley_pseudomolecules MRVSSGFCDGVRIKEAKTEAFTVKDHRGELYKKHYPPALKDDVWRLEKIGKDGAFHGKLN SNGIYTVEHFLQLLVKDQQKLRSILGTGMSNKMWESLVEHAKTCVLSGKHYIYYSKDTAS VGAIFNNIYEFTGLIADDQFISTENLTENQRVFADTLVKQAYDDWINVVEYDGKGLLKFK QKKKSVTTRSDVANVSTSYTSYDSAHSQKQLARGHANIERSLMSSTTKDETRIASNGNQV AIYEANPQDISPSITMQYGMSSLIPEGQFNGSSIQTQASRSSNMLAFGPPPQQPHNFEFS AFGLSMQSPAPNPFDDWPGRLQENRGGVDDCLMEEIRGRSHDMLENEEEMQHMLRILSGG AAANMNNVGGFPSYPSPVPDFNFVDDRAPSSGKAVVGWLKIKAAMRWGIFVRKKAAERRA QLVELDD