Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU2Hr1G077560	97.3	-	-	7968	-218	Containing

Transcripts from Gene BART1_0-u12609

Transcript	Length(bp)	Description
BART1_0-u12609.001	2999	2999 bp MSTRG.12609.1 MSTRG.12609
BART1_0-u12609.002	2965	2965 bp MSTRG.12609.2 MSTRG.12609
BART1_0-u12609.003	2911	2911 bp MSTRG.12609.3 MSTRG.12609
BART1_0-u12609.004	2815	2815 bp MSTRG.12609.4 MSTRG.12609
BART1_0-u12609.005	2740	2740 bp MSTRG.12609.5 MSTRG.12609
BART1_0-u12609.006	1514	1514 bp MSTRG.12609.6 MSTRG.12609
BART1_0-u12609.007	2059	2059 bp MSTRG.12609.7 MSTRG.12609
BART1_0-u12609.008	2874	2874 bp MSTRG.12609.8 MSTRG.12609
BART1_0-u12609.009	2454	2454 bp MSTRG.12609.9 MSTRG.12609
BART1_0-u12609.010	2380	2380 bp MSTRG.12609.10 MSTRG.12609
BART1_0-u12609.011	3014	3014 bp MSTRG.12609.11 MSTRG.12609
BART1_0-u12609.012	2909	2909 bp MSTRG.12609.12 MSTRG.12609
BART1_0-u12609.013	4582	4582 bp MSTRG.12609.13 MSTRG.12609
BART1_0-u12609.014	2582	2582 bp MSTRG.12609.14 MSTRG.12609
BART1_0-u12609.015	2324	2324 bp MSTRG.12609.15 MSTRG.12609
BART1_0-u12609.016	2967	2967 bp MSTRG.12609.16 MSTRG.12609
BART1_0-u12609.017	2648	2648 bp MSTRG.12609.17 MSTRG.12609
BART1_0-u12609.018	2325	2325 bp MSTRG.12609.18 MSTRG.12609
BART1_0-u12609.019	1458	1458 bp MSTRG.12609.19 MSTRG.12609

Exon Structure of BART1_0-u12609

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os04g36660.1	+3	0.0	669	360/406 (89%)	protein|calmodulin binding protein, putative, expressed
TAIR PP10	AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR	+3	1e-168	521	261/357 (73%)	Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622
BRACH PP3	Bradi3g46060.1.p	+3	0.0	621	337/415 (81%)	pacid=32814592 transcript=Bradi3g46060.1 locus=Bradi3g46060 ID=Bradi3g46060.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005634	nucleus
GO:0005516	calmodulin binding
GO:0003700	DNA-binding transcription factor activity
GO:0080142	regulation of salicylic acid biosynthetic process
GO:0016021	integral component of membrane
GO:0006355	regulation of transcription, DNA-templated
GO:0043565	sequence-specific DNA binding

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons