- Transcript BART1_0-u12609.014
- Transcript IDBART1_0-u12609.014
- Gene IDBART1_0-u12609
Barley RTD
Exon Structure of BART1_0-u12609.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 560839277 | 560838389 | - |
| chr2H | 2 | 560840111 | 560839880 | - |
| chr2H | 3 | 560841176 | 560840973 | - |
| chr2H | 4 | 560841423 | 560841263 | - |
| chr2H | 5 | 560841998 | 560841505 | - |
| chr2H | 6 | 560842206 | 560842111 | - |
| chr2H | 7 | 560842352 | 560842277 | - |
| chr2H | 8 | 560844492 | 560844063 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0787519 | 1.11663 | 0.00000000157246 |
| morex | ETI | 0 | 0.0194284 | 0.104464 |
| morex | LEA | 4.32725 | 5.83165 | 5.52699 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.887999 | 0.00000000175629 | 0 |
| morex | ROO2 | 0 | 0.00001078 | 0.56061 |
| morex | NOD | 3.66365 | 0 | 3.90112 |
| morex | RAC | 0 | 0.0000371386 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0.00000257169 |
| morex | LEM | 0 | 0.548366 | 0.0226838 |
| morex | LOD | 0.629064 | 0 | 0.0401867 |
| morex | PAL | 0 | 0.000208821 | 0 |
| morex | SEN | 0.0160805 | 2.80252 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g36660.1 | +1 | 0.0 | 882 | 488/590 (83%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR |
+1 | 0.0 | 556 | 324/597 (54%) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622 |
| BRACH PP3 | Bradi3g46060.2.p | +1 | 0.0 | 803 | 445/592 (75%) | pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2582 bp)
>BART1_0-u12609.014 2582 150831_barley_pseudomolecules ATAGATCTCTCTCTCTCTCCCTCCATCTCTTGCTTTGCCTCTAGTCGTCGCCCAGTCGCT GCCGCACTGCTCCGGCTCGAGCTCGACGCGGGAAGGAGCAGCCCGGGCCTTCTCCAACCC TCGTGCCGCTATCGTTTGCCAGTTACTAGTTGCTAAGGTTCGGCACCACGCCTCCTTGTC CTTGACTGCGATTCGAGGTGTTGATTTTTATGGAGTTTCGGGCCGGTTGTTTTTAATCCC CGAATTGTGGTGGTGGGCGCAGATCTGACCCACGGCGCCGGCAAGGTTGTGGCGCCGCGG AGATGCAGAGGCAGGGGCGCCACATGGAGCGGTCTGGCTCCAAGCGGGCGCTAGACCCTG GCGGCAGTGGCGGAGGCGGCGGCGACGACGAACGTGATCCTAAACGGCCGCGCGTCCCGG CCCTCGCCAGTGTCATTGTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTTTGTTCAT CCCTGGAGCCGATTCTCCGAAGAGTTTCGACACATGTTATTGCATTTGTAGGTCAGCGAA GAAGTAGAGCGTGCTTTAGCCAAATTGGGACCTGCAGCAGCACCTGCTAGAATTGAAGGA AGGACCTCTCCCAAAAGAATTGAGGGCCCCAATGGTAGTAACCTCCAGCTTCAGTTTCGG AGTAGGTTAGCACTCCCACTCTTTACTGGAGGAAAAGTGGAAGGCGAGCAGGGAGCATCA ATACATGTTGTGCTGTTAGATGCAAACACTGGACATGTCGTCACTTCAGGACCCCAGTCA TCTGCGAAACTGGATGTTCTTGTTCTCGAGGGTGATTTTAATAAAGAGAAGGACGAGGAT TGGACTGAAGAAGAATTTGAGAGCCACATTGTGAAAGAACGTGAAGGGAAGAGGCCTCTT TTAAACGGTGATATCCATGTGACACTTAAAGAAGGCGTAGGGACCATAGGAGAGCTTATC TTCACTGACAATTCCAGCTGGATAAGGAGCAGAAAATTCAGACTTGGGATGAGAGTCTCT TCAGGATTTTGTGACGGAGTTCGTATCAAAGAGGCGAAGACAGAGGCTTTTACTGTGAAA GATCACAGAGGAGAATTGTACAAGAAACATTACCCTCCTGCGCTTAAGGATGATGTTTGG AGACTGGAAAAGATTGGAAAGGACGGTGCATTCCACGGGAAACTAAACTCAAACGGAATC TATACAGTTGAACATTTTCTTCAACTTCTTGTTAAAGATCAACAGAAGTTAAGAAGTATC CTTGGTACTGGCATGTCAAATAAGATGTGGGAAAGTCTTGTTGAACATGCAAAAACTTGT GTTCTGAGTGGCAAACATTATATATATTACTCGAAGGATACAGCAAGTGTTGGTGCAATA TTCAATAACATATATGAGTTCACTGGTTTGATTGCTGATGATCAGTTTATTTCAACGGAA AATCTTACTGAAAACCAGAGGGTGTTTGCGGATACGTTGGTGAAGCAAGCATACGATGAT TGGATCAATGTTGTAGAATATGATGGCAAGGGATTGTTGAAATTTAAGCAGAAAAAGAAA TCTGTCACAACAAGAAGTGATGTTGCAAATGTCTCTACAAGCTACACTTCTTATGATTCA GCGCACTCTCAGAAACAATTGGCACGAGGACATGCCAATATTGAGCGATCTCTCATGAGC AGTACGACTAAAGACGAGACAAGAATTGCATCCAACGGGAATCAAGTAGCAATATATGAA GCCAATCCTCAGGACATTTCACCAAGTATTACCATGCAATATGGCATGAGTTCATTGATC CCTGAAGGCCAGTTCAATGGCTCTTCCATCCAAACTCAAGCATCAAGAAGCTCCAACATG CTAGCATTTGGACCTCCACCACAGCAGCCGCATAACTTCGAATTCTCAGCATTTGGTCTG TCCATGCAATCCCCAGCTCCTAATCCTTTTGATGACTGGCCTGGACGGTTGCAGGAGAAC CGCGGTGGTGTTGATGACTGTCTGATGGAGGAGATAAGAGGGAGAAGCCATGACATGCTG GAGAATGAAGAAGAGATGCAACATATGCTGCGCATTCTTAGCGGCGGGGCAGCAGCAAAC ATGAATAATGTAGGTGGCTTTCCCTCCTACCCTTCTCCTGTACCGGACTTCAACTTCGTG GATGATCGTGCTCCCTCATCCGGTAAGGCTGTTGTTGGGTGGCTTAAGATTAAGGCTGCC ATGCGGTGGGGCATCTTCGTCAGGAAGAAAGCAGCTGAGAGAAGAGCTCAGCTTGTTGAG CTGGATGACTAGGGGATACGGATGTTGGTAAGACACTTGTTTTTCTCGTCTTGTATAATT GCTTTGTTGACGCAATTATAGTCAGGATCTCAAGCTCCAAAAGTATGAATGGACTCACGT TGGTTGTATAGGTAGCTGTTTGATGGTCATTATCTAAGTTTTGTTGGTGTTCAGAAAAAC AAAACTGCTACAACATTGGCCTCTACTGTGCAAACTTATTTGTTGGAGATTGGACACTTG AAACAGGCTTTTTTTATGGGAACTAGCAGGTGATCTGCTTTTGCATTAAATGGGCAAATG AG
Protein Sequence (427 aa)
>BART1_0-u12609.014 427 150831_barley_pseudomolecules MRVSSGFCDGVRIKEAKTEAFTVKDHRGELYKKHYPPALKDDVWRLEKIGKDGAFHGKLN SNGIYTVEHFLQLLVKDQQKLRSILGTGMSNKMWESLVEHAKTCVLSGKHYIYYSKDTAS VGAIFNNIYEFTGLIADDQFISTENLTENQRVFADTLVKQAYDDWINVVEYDGKGLLKFK QKKKSVTTRSDVANVSTSYTSYDSAHSQKQLARGHANIERSLMSSTTKDETRIASNGNQV AIYEANPQDISPSITMQYGMSSLIPEGQFNGSSIQTQASRSSNMLAFGPPPQQPHNFEFS AFGLSMQSPAPNPFDDWPGRLQENRGGVDDCLMEEIRGRSHDMLENEEEMQHMLRILSGG AAANMNNVGGFPSYPSPVPDFNFVDDRAPSSGKAVVGWLKIKAAMRWGIFVRKKAAERRA QLVELDD