- Transcript BART1_0-u12609.013
- Transcript IDBART1_0-u12609.013
- Gene IDBART1_0-u12609
Barley RTD
Exon Structure of BART1_0-u12609.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 560839277 | 560838389 | - |
| chr2H | 2 | 560840111 | 560839583 | - |
| chr2H | 3 | 560841176 | 560840973 | - |
| chr2H | 4 | 560841423 | 560841263 | - |
| chr2H | 5 | 560841998 | 560841505 | - |
| chr2H | 6 | 560842181 | 560842111 | - |
| chr2H | 7 | 560844510 | 560842277 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.127332 | 0.591284 | 0 |
| morex | ETI | 0.408379 | 0.1749 | 0.0707988 |
| morex | LEA | 0.65091 | 0.920256 | 0.510147 |
| morex | EPI | 0.0909281 | 0.211235 | 0.462695 |
| morex | ROO | 0.0961689 | 0.477785 | 0.324086 |
| morex | ROO2 | 0.545878 | 0.415543 | 0.520117 |
| morex | NOD | 0.209728 | 0.112485 | 0.145723 |
| morex | RAC | 0.479405 | 0.437549 | 0.435423 |
| morex | INF1 | 0.531491 | 0.51316 | 0.71721 |
| morex | INF2 | 0.383133 | 0.541665 | 0.956788 |
| morex | CAR5 | 0.27425 | 0.160537 | 0 |
| morex | CAR15 | 0.729193 | 0.0917506 | 0.408279 |
| morex | LEM | 0.0490272 | 0 | 0.0666402 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.0729306 | 0 | 0 |
| morex | SEN | 0.39371 | 1.26251 | 0.780657 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g36660.1 | +3 | 0.0 | 669 | 360/406 (89%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR |
+3 | 1e-168 | 521 | 261/357 (73%) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622 |
| BRACH PP3 | Bradi3g46060.1.p | +3 | 0.0 | 621 | 337/415 (81%) | pacid=32814592 transcript=Bradi3g46060.1 locus=Bradi3g46060 ID=Bradi3g46060.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4582 bp)
>BART1_0-u12609.013 4582 150831_barley_pseudomolecules CCTCCACCCACGCCACACATAGATCTCTCTCTCTCTCCCTCCATCTCTTGCTTTGCCTCT AGTCGTCGCCCAGTCGCTGCCGCACTGCTCCGGCTCGAGCTCGACGCGGGAAGGAGCAGC CCGGGCCTTCTCCAACCCTCGTGCCGCTATCGTTTGCCAGTTACTAGTTGCTAAGGTTCG GCACCACGCCTCCTTGTCCTTGACTGCGATTCGAGGTGTTGATTTTTATGGAGTTTCGGG CCGGTTGTTTTTAATCCCCGAATTGTGGTGGTGGGCGCAGATCTGACCCACGGCGCCGGC AAGGTTGTGGCGCCGCGGAGATGCAGAGGCAGGGGCGCCACATGGAGCGGTCTGGCTCCA AGCGGGCGCTAGACCCTGGCGGCAGTGGCGGAGGCGGCGGCGACGACGAACGTGATCCTA AACGGCCGCGCGTCCCGGCCCTCGCCAGGTGAGTGTTGGAGACCTAACTTAATAGGTTTG TGACGGTGGCGCTTCCTAGGGGTTGGGTTAGCGATTTGCTGTAGTACTACTAGCTTAAAC TCAGATATCATTAAGAGATGCTATCGCAATTAATGATTGGCCCAGTTCGTGTTCATACGG CTTTGGTTTTGTACTGACCTGTTTTAATGCTGAAATGTGTGCATTTGCTCTCAGCTGAAG GTGCTAAATCACTGTGTCTGCTCTTTAGACAGCTAAAATTGGGCAGTTAAAGAGAAAGTT CACTTTCACTTGAACGGACTAGTTAATGGAGAATAAGAGTTTCCTATCAAGAACGGGATT GAAACATAGTTTTTTGTGTGAGAAGTGAGAACATGTCCTGCATCGGCCATTTTAGTTGAA AGATTGTTTCAAAACATTTTATGAGCTCTGAAGTCTATTGTCATCCACAACAAGACATAG GCACATATAATCAGTCAATCAGTTCCTTGATTGGTATTGTTTAAGATTGCTATTCACCGG AATTTATTATAATATGTTTGTGATATATATTCACTGGACTAGGACTCAAGTTGATGTAAT TTTTCCGATTTTAGTAAGATATTGATTATATCCTACGTTGAACGTTGAGTGAAATTCTTA ATAGGCATCTGTCTCATCTGCTTCACCATATAATTCATTGACTACTTGAATTTGAATATC TATTTTCTAGGGTCCCGATATTCACCACACGTGTGACATATTAGACATCCGCCCACACAC CATGTGTGGCGTACGCAGGAGGCAGCCCACACGGGTCGTGTGTGGGCGAACATTAGAACT GCCCACACGTGTGGGCGCAGCTACTTCGTGCCACACGCCCAACAAGTACTACTCATCCCC ACCCCGCGCGTGTGGCACGAGGCAAATCTGCTCACACGTCCTGGCGTAGCTACGTTAGTT ACCCGCGGGATGACACTTTAGTTACCCTCGGATGACAACTTTAGTTACCAGGATGGCAAA TGTAGTTGTAAAAGCATGGCAACTCTCTCCGTTTTGGTTAACTATAGTTACCCGGGGATA GTTGCTATGTGTGTTTACCTAGTTGCCATGTGTGGTCCAACCATAGTTGCCATGTATGGT TAATCATAGTTGCCATGTGTTCACCTAGTTGCCATGTACGCGCAACTGCAGTTGCCATCT AGGAACGAACCATAGTTGACATGTGTGTTTACCTAGTTGCCACGTACGCGCAACTGCAGT TGCCATCTAGCAATGTACGAGCGTCGTATGGGCGAAGAGCAATTCGCCCACACGCGCGTG GACTAGGTGGTGACTGTGTGGGCAGAAACCGGTTCGCCCACACGACGCAGCTGGCAACCG CGCGCTGCGGGTTGTGTGGGCGAACTCTCCAACGCCCACACACATGATGATGCCTACGTG GCACTGAAATTCCAACAGATTCCTCTAGGATTCATGCAAAACAGATTCAACGTGGATCGA CCGTGTGGGCGAAATGCAAACATGCGACACGTGTGGGCGTTATCATTTGGGATTTTCTAA AACCACATGACAACTATGTGACACATGCTTAATTTCATCTAAGAATTTTATATTGGTTAA CCATTGCACAACAAATGGTATACGTAAATCTAAGGTTCTAAGGTGTGCATCCTTTGTTTA TTTGAGGTTTATTATACCGTGCTTTGATAAACCTCTGCAACTTGTCCTTTTCTTTCAGTG TCATTGTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTTTGTTCATCCCTGGAGCCGA TTCTCCGAAGAGTTGTCAGCGAAGAAGTAGAGCGTGCTTTAGCCAAATTGGGACCTGCAG CAGCACCTGCTAGAATTGAAGGAAGGACCTCTCCCAAAAGAATTGAGGGCCCCAATGGTA GTAACCTCCAGCTTCAGTTTCGGAGTAGGTTAGCACTCCCACTCTTTACTGGAGGAAAAG TGGAAGGCGAGCAGGGAGCATCAATACATGTTGTGCTGTTAGATGCAAACACTGGACATG TCGTCACTTCAGGACCCCAGTCATCTGCGAAACTGGATGTTCTTGTTCTCGAGGGTGATT TTAATAAAGAGAAGGACGAGGATTGGACTGAAGAAGAATTTGAGAGCCACATTGTGAAAG AACGTGAAGGGAAGAGGCCTCTTTTAAACGGTGATATCCATGTGACACTTAAAGAAGGCG TAGGGACCATAGGAGAGCTTATCTTCACTGACAATTCCAGCTGGATAAGGAGCAGAAAAT TCAGACTTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGAGTTCGTATCAAAGAGGCGA AGACAGAGGCTTTTACTGTGAAAGATCACAGAGGAGAATTGTACAAGAAACATTACCCTC CTGCGCTTAAGGATGATGTTTGGAGACTGGAAAAGATTGGAAAGGACGGTGCATTCCACG GGAAACTAAACTCAAACGGAATCTATACAGTTGAACATTTTCTTCAACTTCTTGTTAAAG ATCAACAGAAGTTAAGAAGTATCCTTGGTACTGGCATGTCAAATAAGATGTGGGAAAGTC TTGTTGAACATGCAAAAACTTGTGTTCTGAGTGGCAAACATTATATATATTACTCGAAGG ATACAGCAAGTGTTGGTGCAATATTCAATAACATATATGAGTTCACTGGTTTGATTGCTG ATGATCAGTTTATTTCAACGGAAAATCTTACTGAAAACCAGAGGGTGTTTGCGGATACGT TGGTGAAGCAAGCATACGATGATTGGATCAATGTTGTAGAATATGATGGCAAGGGATTGT TGAAATTTAAGCAGAAAAAGAAATCTGTCACAACAAGAAGTGATGTTGCAAATGTCTCTA CAAGCTACACTTCTTATGATTCAGCGCACTCTCAGAAACAATTGGCACGAGGACATGCCA ATATTGAGCGATCTCTCATGAGCAGTACGACTAAAGGTATCTGTTTTTTGCCTCTTGTAG CTCAAGACACTTCTTTCTGAATGTTTTTGGTGTGCCCTTCGCATTAGCCATTCTTCTTGA GCACACTAATTTAGATTATTGAAAATGCACTTAAATTCTATTATGACCTAAAGTTCATGG TTCCAGTTTCTATCCACCTACCATCCTTACATGAAAGGACAATAAATATTGTTTCCAGTG TCTATTACTCTTGCTAACATCCTTTTATACCTTTTGTATTAACGTGTTTGAAATATGCAA AATGGGATGGGATGCATCATCAGGGTCTAAAGAACGAGACAAGAATTGCATCCAACGGGA ATCAAGTAGCAATATATGAAGCCAATCCTCAGGACATTTCACCAAGTATTACCATGCAAT ATGGCATGAGTTCATTGATCCCTGAAGGCCAGTTCAATGGCTCTTCCATCCAAACTCAAG CATCAAGAAGCTCCAACATGCTAGCATTTGGACCTCCACCACAGCAGCCGCATAACTTCG AATTCTCAGCATTTGGTCTGTCCATGCAATCCCCAGCTCCTAATCCTTTTGATGACTGGC CTGGACGGTTGCAGGAGAACCGCGGTGGTGTTGATGACTGTCTGATGGAGGAGATAAGAG GGAGAAGCCATGACATGCTGGAGAATGAAGAAGAGATGCAACATATGCTGCGCATTCTTA GCGGCGGGGCAGCAGCAAACATGAATAATGTAGGTGGCTTTCCCTCCTACCCTTCTCCTG TACCGGACTTCAACTTCGTGGATGATCGTGCTCCCTCATCCGGTAAGGCTGTTGTTGGGT GGCTTAAGATTAAGGCTGCCATGCGGTGGGGCATCTTCGTCAGGAAGAAAGCAGCTGAGA GAAGAGCTCAGCTTGTTGAGCTGGATGACTAGGGGATACGGATGTTGGTAAGACACTTGT TTTTCTCGTCTTGTATAATTGCTTTGTTGACGCAATTATAGTCAGGATCTCAAGCTCCAA AAGTATGAATGGACTCACGTTGGTTGTATAGGTAGCTGTTTGATGGTCATTATCTAAGTT TTGTTGGTGTTCAGAAAAACAAAACTGCTACAACATTGGCCTCTACTGTGCAAACTTATT TGTTGGAGATTGGACACTTGAAACAGGCTTTTTTTATGGGAACTAGCAGGTGATCTGCTT TTGCATTAAATGGGCAAATGAG
Protein Sequence (242 aa)
>BART1_0-u12609.013 242 150831_barley_pseudomolecules MRVSSGFCDGVRIKEAKTEAFTVKDHRGELYKKHYPPALKDDVWRLEKIGKDGAFHGKLN SNGIYTVEHFLQLLVKDQQKLRSILGTGMSNKMWESLVEHAKTCVLSGKHYIYYSKDTAS VGAIFNNIYEFTGLIADDQFISTENLTENQRVFADTLVKQAYDDWINVVEYDGKGLLKFK QKKKSVTTRSDVANVSTSYTSYDSAHSQKQLARGHANIERSLMSSTTKGICFLPLVAQDT SF