- Transcript BART1_0-u11397.012
- Transcript IDBART1_0-u11397.012
- Gene IDBART1_0-u11397
Barley RTD
Exon Structure of BART1_0-u11397.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405594715 | 405594646 | + |
| chr2H | 2 | 405594910 | 405594845 | + |
| chr2H | 3 | 405597748 | 405596579 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 1.83882 | 1.19136 |
| morex | LEA | 0 | 0 | 2.57691 |
| morex | EPI | 3.4571 | 10.4529 | 3.00105 |
| morex | ROO | 0.00000262748 | 0 | 0 |
| morex | ROO2 | 0.20749 | 0 | 0.157905 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.328205 | 0.671664 | 0 |
| morex | INF1 | 0 | 0.526232 | 0.166765 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.578628 | 0 | 1.34622 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1306 bp)
>BART1_0-u11397.012 1306 150831_barley_pseudomolecules GCAGAGAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGCAAGAACTCGTACCCCA TTGCAACAAGAGCGACAAGGCGTCCATTCTAGACGAAGCAATCGAGTACTTGAAGTCTCT GCAACTGCAAGTTCAGATTGGCCATCTATCTATATGATAATATAAGATGCCAAGGAAACT CAGACATGTCCTTCACATCCCTAACGAACGGCCAGAATATCACCTGGCATATATAACTCG CAGGTATTCCCAGGAAGCAATAAAATACTGATTACGATGCTAAGTTTAACACTTTCTTTA ACTTATCATCTTTGACATGTTGCTGAAATTTTTGTGTAATGACCAACCAGGGGGGTTGGA TACAGGAGGTCAGAGCAAACTAGTCATAGAAGAGAAGAGATATGGTACCAAGACACTCTG TGCTGTAAGGCCAGGGGCAGATCATGCAACATTGAGCCTTGGTGGCACCACTAAGCAACC AACACGTATGGGCCCGAGATCATGCGGAATTGCGGATAGCAGATACTATTCTTATCCGAA GAATAGTCTTGAGCACCACCTTTCTATTTATGGAAGGATTTGGTCCATGGGAGATGAACT TGGGGCTTTGACAGGGACAACAAAAGATGATTGTGCCGATATGCTGCAGATCTGGAGATG ACATTGTTGGAGCCAGGATCTGCACAATGACACAACTTGTGCACTTCTGCTCGTCTTTCC ACCGATGTAACTCCACTCCACTGGTGAGTCCTAATGGGACTGTCCTGTTGACCCGCGGTC GAGCTATCGATATTCGAATGGACGGCTGAAACAAGGGTAGGCAGAAGAAACTTGTGCTTT TCGGACACAATTGTAGATCAGGTTTGCATATGCCTTTCAGAAATTCAGACAAGTGGTACA TGAAGATCATTCTCATTCGGCCATCAGGATCGCGAGATTATCGCCTTACCCTTAACCCTG GAAAGATTGTACCGCATGTGGTGATGTCCTGTTACAAGTTAATCAGGACTGTGATGGGCA TCATCCGTTTCGTCACAGGGTAATTAGTCTCTGAAAATATCAATGATGCTGCATCTTTTG TTGTGTTATACTCCAATTGTGAGTCAGCTTCAGTCGCCGTCAGGGGAGACTGGGACTTTG CTTCGCATTTACACGTCCAGATTTGGTTGTCATGCTCGTATCATAGCGATTGATGTAGAT GCTTGGCAATTTGGAGGACAGATATTCATACCATGAAAAAAAAGAGGACAGATATTCATT CTTTGCGTCTTGCTCTTGCTTCTATATATATCTAGGAAACCAGAAC
Protein Sequence (114 aa)
>BART1_0-u11397.012 114 150831_barley_pseudomolecules MLLKFLCNDQPGGLDTGGQSKLVIEEKRYGTKTLCAVRPGADHATLSLGGTTKQPTRMGP RSCGIADSRYYSYPKNSLEHHLSIYGRIWSMGDELGALTGTTKDDCADMLQIWR