- Gene BART1_0-u11397
- Gene IDBART1_0-u11397
- Location chr2H: 405593634 - 405598229
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU2Hr1G060680 | 89.6 | + | + | 4118 | -478 | Containing |
| HORVU2Hr1G060690 | 21.3 | + | + | 978 | -3618 | Containing |
Transcripts from Gene BART1_0-u11397
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u11397.001 | 2975 | 2975 bp MSTRG.11397.1 MSTRG.11397 |
| BART1_0-u11397.002 | 2852 | 2852 bp MSTRG.11397.2 MSTRG.11397 |
| BART1_0-u11397.003 | 2283 | 2283 bp MSTRG.11397.3 MSTRG.11397 |
| BART1_0-u11397.004 | 2941 | 2941 bp MSTRG.11397.4 MSTRG.11397 |
| BART1_0-u11397.005 | 2971 | 2971 bp MSTRG.11397.5 MSTRG.11397 |
| BART1_0-u11397.006 | 2766 | 2766 bp MSTRG.11397.6 MSTRG.11397 |
| BART1_0-u11397.007 | 4060 | 4060 bp MSTRG.11397.7 MSTRG.11397 |
| BART1_0-u11397.008 | 2744 | 2744 bp MSTRG.11397.8 MSTRG.11397 |
| BART1_0-u11397.009 | 3568 | 3568 bp MSTRG.11397.9 MSTRG.11397 |
| BART1_0-u11397.010 | 2253 | 2253 bp MSTRG.11397.10 MSTRG.11397 |
| BART1_0-u11397.011 | 1194 | 1194 bp MSTRG.11397.11 MSTRG.11397 |
| BART1_0-u11397.012 | 1306 | 1306 bp MSTRG.11397.12 MSTRG.11397 |
Exon Structure of BART1_0-u11397
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +2 | 5e-39 | 152 | 104/217 (48%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +2 | 5e-57 | 203 | 128/215 (60%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0005634 | nucleus |
| GO:0003677 | DNA binding |
| GO:0045893 | positive regulation of transcription, DNA-templated |
| GO:0016021 | integral component of membrane |
| GO:0046983 | protein dimerization activity |
| GO:0080006 | internode patterning |
| GO:0090229 | negative regulation of red or far-red light signaling pathway |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons