- Transcript BART1_0-u11397.006
- Transcript IDBART1_0-u11397.006
- Gene IDBART1_0-u11397
Barley RTD
Exon Structure of BART1_0-u11397.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405593990 | 405593736 | + |
| chr2H | 2 | 405594558 | 405594075 | + |
| chr2H | 3 | 405594715 | 405594650 | + |
| chr2H | 4 | 405594910 | 405594845 | + |
| chr2H | 5 | 405595321 | 405595025 | + |
| chr2H | 6 | 405595560 | 405595400 | + |
| chr2H | 7 | 405598229 | 405596793 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0000139607 | 0 | 0 |
| morex | ETI | 0.000457368 | 1.23019 | 0.00041841 |
| morex | LEA | 2.24518 | 3.05879 | 2.55193 |
| morex | EPI | 0.945529 | 0.000333488 | 0.000000010591 |
| morex | ROO | 0 | 0.544482 | 0.3808 |
| morex | ROO2 | 0 | 0.243639 | 0.168045 |
| morex | NOD | 0 | 0.525937 | 0.182346 |
| morex | RAC | 0 | 0.0236766 | 0.240678 |
| morex | INF1 | 0.559781 | 0 | 0.511556 |
| morex | INF2 | 0 | 1.03295 | 0.468295 |
| morex | CAR5 | 0.986199 | 1.97288 | 2.4524 |
| morex | CAR15 | 1.04906 | 0.758201 | 1.67159 |
| morex | LEM | 0.153622 | 0.00000379892 | 0 |
| morex | LOD | 0.20732 | 0.504341 | 0 |
| morex | PAL | 0.141041 | 0 | 0.347768 |
| morex | SEN | 2.70359 | 3.97236 | 5.44571 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +2 | 6e-77 | 258 | 150/239 (63%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +2 | 6e-140 | 422 | 258/388 (66%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2766 bp)
>BART1_0-u11397.006 2766 150831_barley_pseudomolecules CTCACAGGGCGGACAGCGATGTCAACGGATCCTCCCCCTCCATACGAATGCCGCACAACT CTTCTCTCCTCTTCTCTTCTCTCGTCCTTTTATTATTCCCGAGAAAATCGAACCCAGCTA GACAGTCCACAGCTCTGGCACACAGCTTCGCTCTCCGCCGGTTTCTGCTCAAGTGGAGAG GCCCGTCAGCTCGATCGGTTCCAGGATCATGGACGACGGCGCAACACCGCCGCCCAACCA CAAGAGGCACCTCCCACTGCGGGAGGCGGGCGGCGACCTCGTGGAGCTGCTGTGGCAGAA CGGAGCCATCGTAGCGCAGGCGCAGGCGCAGACGCCGCACCGCCGGTGTTCCCAGAGCGG CGCGGCGAGCGGCGTCACCGCGGAGGACGCGACCGCGTGGTTGATCCCGGACGGCGGCGG CGGCAGGGACCTGTACTCGCACCTCTGGCACGGCGTCGCCGACGGGGATGCGGGCGCGCT CGTGGCGGGGAGCGGCGGCGCCGGGACGAGCTTCTGCGGGAGCAACGCGGTGACGGCGCC GGCGCTGCTGCCATCGCCGGGCTCGTCCGCAGCGGGAGGCCAAGCGCTACTGTTCAAGAG GGGGAGGGACCAACTGGATAGCCGCCGAGAGGACGAACTGGATACCGACGACTGTGAGGC CGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAAGCGCAGGACTCGTGCTGCCGAGGT CCATAACCAATCAGAGCGGAGAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGCA AGAACTCGTACCCCATTGCAACAAGAGCGACAAGGCGTCCATTCTAGACGAAGCAATCGA GTACTTGAAGTCTCTGCAACTGCAAGTTCAGATCATGTGGATGACTACTGGGATGACGCC CATGATGTACCCTGGTGCTCACCAACTCATGTCGCCGATGGCCGTGGGCTTGAACTCAGC GTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAAAAAAGGGTAGCACCGTTTATGAA CAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCTCCAGCTATCGATTCCCTCGATGT GGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATCC AGACGACACGCTAACAGCGGCATCTCAGCTTCCGGGTATGTTGCCCTATGCATCTCAAAA GGCACAACAAAACCAGAATCATCAGTTACTGCCTAGCATAGACATGCCAGCTTCAGGACC CTGCCCGCCATCTTTTGCTGACGGAACGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGAT GATTTACTGGGGGGTTGGATACAGGAGGTCAGAGCAAACTAGTCATAGAAGAGAAGAGAT ATGGTACCAAGACACTCTGTGCTGTAAGGCCAGGGGCAGATCATGCAACATTGAGCCTTG GTGGCACCACTAAGCAACCAACACGTATGGGCCCGAGATCATGCGGAATTGCGGATAGCA GATACTATTCTTATCCGAAGAATAGTCTTGAGCACCACCTTTCTATTTATGGAAGGATTT GGTCCATGGGAGATGAACTTGGGGCTTTGACAGGGACAACAAAAGATGATTGTGCCGATA TGCTGCAGATCTGGAGATGACATTGTTGGAGCCAGGATCTGCACAATGACACAACTTGTG CACTTCTGCTCGTCTTTCCACCGATGTAACTCCACTCCACTGGTGAGTCCTAATGGGACT GTCCTGTTGACCCGCGGTCGAGCTATCGATATTCGAATGGACGGCTGAAACAAGGGTAGG CAGAAGAAACTTGTGCTTTTCGGACACAATTGTAGATCAGGTTTGCATATGCCTTTCAGA AATTCAGACAAGTGGTACATGAAGATCATTCTCATTCGGCCATCAGGATCGCGAGATTAT CGCCTTACCCTTAACCCTGGAAAGATTGTACCGCATGTGGTGATGTCCTGTTACAAGTTA ATCAGGACTGTGATGGGCATCATCCGTTTCGTCACAGGGTAATTAGTCTCTGAAAATATC AATGATGCTGCATCTTTTGTTGTGTTATACTCCAATTGTGAGTCAGCTTCAGTCGCCGTC AGGGGAGACTGGGACTTTGCTTCGCATTTACACGTCCAGATTTGGTTGTCATGCTCGTAT CATAGCGATTGATGTAGATGCTTGGCAATTTGGAGGACAGATATTCATACCATGAAAAAA AAGAGGACAGATATTCATTCTTTGCGTCTTGCTCTTGCTTCTATATATATCTAGGAAACC AGAACTAGTCAAAATTTCAAACATGTGAAAAGATTATTGGCTTCGCCCGGGTTCGAACCG GAGACCTTCAGTGTGTTAGACTGACGTGATAACCAACTACACCACGAAACCTTTAGTGCT TTGTCCACATATGGTAAAGTTCTCTTCTAACTACGCTCAGCTGACGAACCAAACGCAAGA AGAAAGCAAAGATAAAGTGGAAGGAAAAGGAGCAAGGAGGAGAGTAGGCGTTCTGAACAC ACCGACCTCTGATCCTTGCAATCTCGCTGATGACTTTTACGCAGGGACGCAAGATTCCTG GCGAACGCAGGCCGCTGATCCTTACAATGTCGTTGATGACTTTTACGCAGAGATCCAAAC CCAAAAGTATTCAGAAATACTATCTGGTGAATGTTCGCTGGGCGGACAACCCCGGCGAAC GCTCTCTCCCCCGTTGCATGGACCTTGGCGCAGGTCGCTGGCCACGTAGGATTGCTCGAG TAGTTC
Protein Sequence (362 aa)
>BART1_0-u11397.006 362 150831_barley_pseudomolecules MDDGATPPPNHKRHLPLREAGGDLVELLWQNGAIVAQAQAQTPHRRCSQSGAASGVTAED ATAWLIPDGGGGRDLYSHLWHGVADGDAGALVAGSGGAGTSFCGSNAVTAPALLPSPGSS AAGGQALLFKRGRDQLDSRREDELDTDDCEAVNETRPQRPAAKRRTRAAEVHNQSERRRR DRINEKMKALQELVPHCNKSDKASILDEAIEYLKSLQLQVQIMWMTTGMTPMMYPGAHQL MSPMAVGLNSACIPTAQSLSQLQKRVAPFMNNHLPDQMPQVQSPAIDSLDVANQMQNNGV CGEPRNPFLHPDDTLTAASQLPGMLPYASQKAQQNQNHQLLPSIDMPASGPCPPSFADGT GK