- Transcript BART1_0-u11397.005
- Transcript IDBART1_0-u11397.005
- Gene IDBART1_0-u11397
Barley RTD
Exon Structure of BART1_0-u11397.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405594558 | 405593736 | + |
| chr2H | 2 | 405594729 | 405594650 | + |
| chr2H | 3 | 405594910 | 405594845 | + |
| chr2H | 4 | 405595321 | 405595025 | + |
| chr2H | 5 | 405595560 | 405595400 | + |
| chr2H | 6 | 405596685 | 405596579 | + |
| chr2H | 7 | 405598229 | 405596793 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +1 | 2e-43 | 164 | 103/191 (54%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +1 | 4e-60 | 211 | 128/189 (68%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2971 bp)
>BART1_0-u11397.005 2971 150831_barley_pseudomolecules CTCACAGGGCGGACAGCGATGTCAACGGATCCTCCCCCTCCATACGAATGCCGCACAACT CTTCTCTCCTCTTCTCTTCTCTCGTCCTTTTATTATTCCCGAGAAAATCGAACCCAGCTA GACAGTCCACAGCTCTGGCACACAGCTTCGCTCTCCGCCGGTTTCTGCTCAAGTGGAGAG GCCCGTCAGCTCGATCGGTTCCAGGATCATGGACGACGGCGCAACACCGCCGCCCAACCA CAAGAGGCACCTCCCGTAATTTACGAGCTTCTCTCACCAATTGATTCGTTTCTTGTGTCT GTGCTTCTTGTTCCTTGTGAGAGCCTTCTCGTGGCGCAGACTGCGGGAGGCGGGCGGCGA CCTCGTGGAGCTGCTGTGGCAGAACGGAGCCATCGTAGCGCAGGCGCAGGCGCAGACGCC GCACCGCCGGTGTTCCCAGAGCGGCGCGGCGAGCGGCGTCACCGCGGAGGACGCGACCGC GTGGTTGATCCCGGACGGCGGCGGCGGCAGGGACCTGTACTCGCACCTCTGGCACGGCGT CGCCGACGGGGATGCGGGCGCGCTCGTGGCGGGGAGCGGCGGCGCCGGGACGAGCTTCTG CGGGAGCAACGCGGTGACGGCGCCGGCGCTGCTGCCATCGCCGGGCTCGTCCGCAGCGGG AGGCCAAGCGCTACTGTTCAAGAGGGGGAGGGACCAACTGGATAGCCGCCGAGAGGACGA ACTGGATACCGACGACTGTGAGGCCGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAA GCGCAGGACTCGTGCTGCCGAGGTCCATAACCAATCAGAGCGGAGAAGAAGGGATCGGAT CAACGAAAAGATGAAAGCATTGCAAGAACTCGTACCCCATTGCAACAAGGTACCAAAGAA ACTAGCGACAAGGCGTCCATTCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAACTG CAAGTTCAGATCATGTGGATGACTACTGGGATGACGCCCATGATGTACCCTGGTGCTCAC CAACTCATGTCGCCGATGGCCGTGGGCTTGAACTCAGCGTGCATTCCCACGGCGCAGAGC CTTAGCCAGCTGCAAAAAAGGGTAGCACCGTTTATGAACAATCATCTCCCCGATCAAATG CCTCAGGTCCAATCTCCAGCTATCGATTCCCTCGATGTGGCAAACCAGATGCAAAACAAT GGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATCCAGACGACACGCTAACAGCGGCA TCTCAGCTTCCGGGTATGTTGCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCAT CAGTTACTGCCTAGCATAGACATGCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTGAC GGAACGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGATGATTTACTGATTGGCCATCTAT CTATATGATAATATAAGATGCCAAGGAAACTCAGACATGTCCTTCACATCCCTAACGAAC GGCCAGAATATCACCTGGCATATATAACTCGCAGGGGGGTTGGATACAGGAGGTCAGAGC AAACTAGTCATAGAAGAGAAGAGATATGGTACCAAGACACTCTGTGCTGTAAGGCCAGGG GCAGATCATGCAACATTGAGCCTTGGTGGCACCACTAAGCAACCAACACGTATGGGCCCG AGATCATGCGGAATTGCGGATAGCAGATACTATTCTTATCCGAAGAATAGTCTTGAGCAC CACCTTTCTATTTATGGAAGGATTTGGTCCATGGGAGATGAACTTGGGGCTTTGACAGGG ACAACAAAAGATGATTGTGCCGATATGCTGCAGATCTGGAGATGACATTGTTGGAGCCAG GATCTGCACAATGACACAACTTGTGCACTTCTGCTCGTCTTTCCACCGATGTAACTCCAC TCCACTGGTGAGTCCTAATGGGACTGTCCTGTTGACCCGCGGTCGAGCTATCGATATTCG AATGGACGGCTGAAACAAGGGTAGGCAGAAGAAACTTGTGCTTTTCGGACACAATTGTAG ATCAGGTTTGCATATGCCTTTCAGAAATTCAGACAAGTGGTACATGAAGATCATTCTCAT TCGGCCATCAGGATCGCGAGATTATCGCCTTACCCTTAACCCTGGAAAGATTGTACCGCA TGTGGTGATGTCCTGTTACAAGTTAATCAGGACTGTGATGGGCATCATCCGTTTCGTCAC AGGGTAATTAGTCTCTGAAAATATCAATGATGCTGCATCTTTTGTTGTGTTATACTCCAA TTGTGAGTCAGCTTCAGTCGCCGTCAGGGGAGACTGGGACTTTGCTTCGCATTTACACGT CCAGATTTGGTTGTCATGCTCGTATCATAGCGATTGATGTAGATGCTTGGCAATTTGGAG GACAGATATTCATACCATGAAAAAAAAGAGGACAGATATTCATTCTTTGCGTCTTGCTCT TGCTTCTATATATATCTAGGAAACCAGAACTAGTCAAAATTTCAAACATGTGAAAAGATT ATTGGCTTCGCCCGGGTTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCA ACTACACCACGAAACCTTTAGTGCTTTGTCCACATATGGTAAAGTTCTCTTCTAACTACG CTCAGCTGACGAACCAAACGCAAGAAGAAAGCAAAGATAAAGTGGAAGGAAAAGGAGCAA GGAGGAGAGTAGGCGTTCTGAACACACCGACCTCTGATCCTTGCAATCTCGCTGATGACT TTTACGCAGGGACGCAAGATTCCTGGCGAACGCAGGCCGCTGATCCTTACAATGTCGTTG ATGACTTTTACGCAGAGATCCAAACCCAAAAGTATTCAGAAATACTATCTGGTGAATGTT CGCTGGGCGGACAACCCCGGCGAACGCTCTCTCCCCCGTTGCATGGACCTTGGCGCAGGT CGCTGGCCACGTAGGATTGCTCGAGTAGTTC
Protein Sequence (140 aa)
>BART1_0-u11397.005 140 150831_barley_pseudomolecules MWMTTGMTPMMYPGAHQLMSPMAVGLNSACIPTAQSLSQLQKRVAPFMNNHLPDQMPQVQ SPAIDSLDVANQMQNNGVCGEPRNPFLHPDDTLTAASQLPGMLPYASQKAQQNQNHQLLP SIDMPASGPCPPSFADGTGK