- Transcript BART1_0-u10056.005
- Transcript IDBART1_0-u10056.005
- Gene IDBART1_0-u10056
Barley RTD
Exon Structure of BART1_0-u10056.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 196197765 | 196196799 | - |
| chr2H | 2 | 196198594 | 196198527 | - |
| chr2H | 3 | 196200372 | 196200244 | - |
| chr2H | 4 | 196200943 | 196200894 | - |
| chr2H | 5 | 196201575 | 196201168 | - |
| chr2H | 6 | 196202024 | 196201954 | - |
| chr2H | 7 | 196203345 | 196203171 | - |
| chr2H | 8 | 196204297 | 196204201 | - |
| chr2H | 9 | 196205297 | 196204456 | - |
| chr2H | 10 | 196205912 | 196205811 | - |
| chr2H | 11 | 196206098 | 196206017 | - |
| chr2H | 12 | 196206590 | 196206413 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.39303 | 2.38082 | 1.97806 |
| morex | ETI | 1.94797 | 0.0000272725 | 0.300658 |
| morex | LEA | 2.84878 | 1.38808 | 0.791879 |
| morex | EPI | 0.0000577069 | 5.33387 | 2.011 |
| morex | ROO | 3.74206 | 1.09631 | 0.755444 |
| morex | ROO2 | 0.00000341541 | 0.0592103 | 0.000000000978647 |
| morex | NOD | 0.09427 | 1.49512 | 0.108366 |
| morex | RAC | 1.70769 | 3.00269 | 0.0202461 |
| morex | INF1 | 11.0293 | 0.615121 | 1.14154 |
| morex | INF2 | 0.0130069 | 0.00176 | 0.137611 |
| morex | CAR5 | 0.000000257783 | 4.11305 | 0.954955 |
| morex | CAR15 | 1.15842 | 0.0220548 | 0.0000000020333 |
| morex | LEM | 6.09075 | 1.00794 | 0.00101556 |
| morex | LOD | 0.0000382004 | 6.94508 | 6.18326 |
| morex | PAL | 1.85851 | 1.91662 | 0.513188 |
| morex | SEN | 0.0000253658 | 0.835635 | 2.88259 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g37610.1 | +3 | 0.0 | 1272 | 661/899 (74%) | protein|B3 DNA binding domain containing protein, putative, expressed |
| TAIR PP10 | AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR |
+3 | 4e-137 | 432 | 235/450 (52%) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 |
| BRACH PP3 | Bradi1g24720.1.p | +3 | 0.0 | 1349 | 711/908 (78%) | pacid=32795970 transcript=Bradi1g24720.1 locus=Bradi1g24720 ID=Bradi1g24720.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3169 bp)
>BART1_0-u10056.005 3169 150831_barley_pseudomolecules AGCAGCCGCAGCAGCAGCACCAACAGCAGCAGCAGCAGGGCCCTTCGCCCGCCTCGCTCC AGCAGCGGCCCAGGATCTGCTTCAACGCGCACTGCAAGGACCCCAAATCCGAGGGCGCGC GCCACCGCGGCTGGCGCCTCCGCTCCGGCGACTACGCCGAGCTCTGCGACCGATGCTATG GTTCGTTCGAGCATGGGACCTTCTGCGAGACGTTCCACTCGGAGGTGGCCGGATGGAGGA AATGCGAAGCGTGCGGGAAGAGGCTACATTGTGGGTGCATCGTCTCCGTCCATGCGTATG CGCTGCTCGACGCCGGCGGAGTTGACTGCATCCTATGTGCTCGCAAGTCGTATGTGGCAA TGGCACCAAGTCAGATGTGGTCAACTCCTACTGTGCATATGCCTCAAAATGTTGCTGACA GAAAGGACAGTTATGTAAAGAGTTGGAGACCTCCTGCGGGCCAGATTTCAAGTCAGTGGC GACAGAATCACCAGCTGTGGAACATGTCCAGTATACAGACGGACTTGCAGCAACGTCTAG CTTATGAGTTTGATAGGCCAAGTGGCAGTGAAAAATTACCTCCAGGGCGCACTTTTATTC ATGCCCAGGAAAAGAAATCCGATGACATGCATGACAGACCAACGACACCTGCCGGCATGG GCCAGATTATAAGGGACAGATATGCCAATGGGCTCGGACAGCAAACAAACATGGATCCGA CACACTCCTCTACGCCCTACCAGAGAGAAGGACCAAATCAAAATAGCCTTCATGATCCTA GTCACCATGTAGGAGAAAGTGACCCTTTGTCTTCAAGGAAAGGGATAGTTTCAGATGGTG GTTCTACTGCATCTACTGGCTTTAAGCTTGATCCACATCATCCATCCATTCTAAAGGATG ATGCGGCATCAACCCTGCCGACAATGGGTGGCTACACTATCACTAATTATCCACCGGTAC CTGGACGAAGCGACCATCTCAGAATCATACCTAATAATCCGCAACAACCACCCACCACGG TGCCCGTCTCAGTAGTGCAGAAACAGTTCTATTCCCATAGTGTCATTGAGCCCGACTACC AAGCGCAATTCCGTAATGGAAAGCCCAGAATGGAGTCCAGAATGGATGCAAAGGCGAGAT CTCAATTACTTCCCCGCTACTGGCCTAGAATAACAGATAAAGAGCTACAGCACTTATCGG GAGATTCGAATTCTGTTATTACTCCTTTGTTCGAGAAAATGTTAAGTGCCAGTGATGCTG GTCGGATTGGTCGTTTGGTGTTGCCAAAGAAATGCGCCGAGGCATACTTCCCCCCAATCT CTCAGCCAGAAGGACTTCCCTTAAAAGTTCAGGATGCCAGTGGTAAGGAATGGGTGTTCC AGTTCCGTTTCTGGCCCAATAATAACAGCAGGATGTATGTATTGGAGGGTGTCACACCTT GCATTCAGTCGATGCACTTACAAGCGGGCGATACAGTAAGTTTCAGCCGAATAGATCCAG AAGGGAAGCTGGTCATGGGATTCAGAAAGACAAAGACTCAAGAACAGATATTCCGCCAGG AAGAACCAACAAAGCCTGCAAATGCTGCCCCAAATCTTCCAGATGTGAATGTTAATGTCA CCGCTCCAGATTCTAGTCCAAATTCTGCGTTGGCGCGGCCAAATAAAGTCAACACAGAGA ACAAAGATACTAGCCCTGTGGAACAAGCAGCTGCCTGTAAAATGGAGAAAACTGGAGTAG CACAAAAGGAAGGGCAGGGAACTGTTCGCTCATCCCCTGGACCTGTCAAGAGAAAAGCAA CATCTCTTGGTTCGAAGATTAAACGGTTCCGGATTGATAACGAGGAATCTATGGAATTGA AGATAACATGGGAGGAGGCTCAAGAATTGCTTCGACCTCCTCTGAAGGCCCCATCGGTTG TTATTGTTGATGGCCATGAGTTTGAGGAATATGAGGAGCCACCAGTACTTGGGAGGAAGA CATATTTTGTTACTGACCAATCAGGTTTCTTCTTTATCAGTGAGAATCATCAATGGGCTC AGTGTGAGGATTGTTCCAAATGGCGGAAACTGCCAGTAGACGCCCTTTTGCCCTCTAAGT GGACCTGTTCTGACAATAAATGGGATCCTGAAAGGACGACTTGTGTCTCTCCACAAGAAG CAAGCATGGAGCAACTTGCAGAGTTGATTCCTATAAAAGCAGGTGCTGCAAAAAAGGCTA AACTGAAGATGGAAACTGACAGTATTGATGTTTCGGATGGGCTGGACACTCTGGCAAACC TTGCTATTCTTGGTGAGGGTGAATCTCTCCCTTCCCAGCCAACTACAAAGCACCCCCGCC ATCGCCCTGGCTGCTCGTGCATTGTGTGCATTCAGCCTCCTAGTGGGAAGGGCCCAAAGC ACAAGCAGACGTGCACCTGCAATGTATGTATGACGGTGCGCCGTCGTTTTAGGACACTGA TGCTTCGGCGTGAGAAGCGTGCGTCTGAGAAAGAATCGGAAGAGCCGCCTCGCAAGAAAG AGCAAGGCCAGTCGAGCGAGTCGATTCCACAAGATGTGCTGCCGGCTAGCACCAGTCCTA CTAGCACTCCCCAAAACGTGAACGGAAATGGTGAAGATGCGGAAGAAACCGTGGAGCATA GCATGGTATCCTCTCCTATGAAGAACCAGATTGACCTGAACATTCAGCCTGAACGGGAAG ACGAGCAGTCACCAAAATCAGATGCGGTCGGTGCAATGAGACTTCCCCGAGAGAACGCAG CCTAGTGCGGCTCACCGTAGTGGTGATAGATAACACCAGATTGAAAACTGTCTATACCAA TGGAGATATGCGGCGCCTGGAGTTGTAGTGTAGGTGTTATTACTTTTTCCATACAAAAGG ATCTAGTTTCCTTCCTGTTGCGGGGGACATATTTCCCAGTGTTGATGCTATATCGTGTAT ACCATAGATCAGTCGGTTGGTGCTGTAGGCAGGCCCTGTTGTAGGTGTTGCCTACCCTGT ATGTATGTGTATTGTAAGGGCAGCGCTCTTCGGCACCATGTAAGCGGCATGCATAATTTA TTCATGTATCGGCTCAACCATCCAAACTAGTAATGCTTCTAATGTCAAAACACAGATAAG GTGTCCTTGTTCCGGTTGGCAAAGAAGCGTTATCCTAGATCGTCCCCTG
Protein Sequence (920 aa)
>BART1_0-u10056.005 920 150831_barley_pseudomolecules QPQQQHQQQQQQGPSPASLQQRPRICFNAHCKDPKSEGARHRGWRLRSGDYAELCDRCYG SFEHGTFCETFHSEVAGWRKCEACGKRLHCGCIVSVHAYALLDAGGVDCILCARKSYVAM APSQMWSTPTVHMPQNVADRKDSYVKSWRPPAGQISSQWRQNHQLWNMSSIQTDLQQRLA YEFDRPSGSEKLPPGRTFIHAQEKKSDDMHDRPTTPAGMGQIIRDRYANGLGQQTNMDPT HSSTPYQREGPNQNSLHDPSHHVGESDPLSSRKGIVSDGGSTASTGFKLDPHHPSILKDD AASTLPTMGGYTITNYPPVPGRSDHLRIIPNNPQQPPTTVPVSVVQKQFYSHSVIEPDYQ AQFRNGKPRMESRMDAKARSQLLPRYWPRITDKELQHLSGDSNSVITPLFEKMLSASDAG RIGRLVLPKKCAEAYFPPISQPEGLPLKVQDASGKEWVFQFRFWPNNNSRMYVLEGVTPC IQSMHLQAGDTVSFSRIDPEGKLVMGFRKTKTQEQIFRQEEPTKPANAAPNLPDVNVNVT APDSSPNSALARPNKVNTENKDTSPVEQAAACKMEKTGVAQKEGQGTVRSSPGPVKRKAT SLGSKIKRFRIDNEESMELKITWEEAQELLRPPLKAPSVVIVDGHEFEEYEEPPVLGRKT YFVTDQSGFFFISENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDPERTTCVSPQEA SMEQLAELIPIKAGAAKKAKLKMETDSIDVSDGLDTLANLAILGEGESLPSQPTTKHPRH RPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMLRREKRASEKESEEPPRKKE QGQSSESIPQDVLPASTSPTSTPQNVNGNGEDAEETVEHSMVSSPMKNQIDLNIQPERED EQSPKSDAVGAMRLPRENAA