- Gene BART1_0-u10056
- Gene IDBART1_0-u10056
- Location chr2H: 196196752 - 196206604
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU2Hr1G040410 | 95.4 | - | - | 9402 | -226 | Partial-Overlap |
Transcripts from Gene BART1_0-u10056
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u10056.001 | 3233 | 3233 bp MSTRG.10056.1 MSTRG.10056 |
BART1_0-u10056.002 | 3215 | 3215 bp MSTRG.10056.2 MSTRG.10056 |
BART1_0-u10056.003 | 3108 | 3108 bp MSTRG.10056.3 MSTRG.10056 |
BART1_0-u10056.004 | 3204 | 3204 bp MSTRG.10056.4 MSTRG.10056 |
BART1_0-u10056.005 | 3169 | 3169 bp MSTRG.10056.5 MSTRG.10056 |
BART1_0-u10056.006 | 3043 | 3043 bp MSTRG.10056.6 MSTRG.10056 |
Exon Structure of BART1_0-u10056
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os07g37610.1 | +2 | 0.0 | 1271 | 660/900 (73%) | protein|B3 DNA binding domain containing protein, putative, expressed |
TAIR PP10 | AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR |
+2 | 1e-141 | 445 | 237/447 (53%) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 |
BRACH PP3 | Bradi1g24720.2.p | +2 | 0.0 | 1361 | 698/909 (77%) | pacid=32795969 transcript=Bradi1g24720.2 locus=Bradi1g24720 ID=Bradi1g24720.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0005634 | nucleus |
GO:0003677 | DNA binding |
GO:0008270 | zinc ion binding |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons