Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU2Hr1G04041095.4--9402-226Partial-Overlap




Transcripts from Gene BART1_0-u10056

TranscriptLength(bp)Description
BART1_0-u10056.00132333233 bp MSTRG.10056.1 MSTRG.10056
BART1_0-u10056.00232153215 bp MSTRG.10056.2 MSTRG.10056
BART1_0-u10056.00331083108 bp MSTRG.10056.3 MSTRG.10056
BART1_0-u10056.00432043204 bp MSTRG.10056.4 MSTRG.10056
BART1_0-u10056.00531693169 bp MSTRG.10056.5 MSTRG.10056
BART1_0-u10056.00630433043 bp MSTRG.10056.6 MSTRG.10056



Exon Structure of BART1_0-u10056


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g37610.1 +2 0.0 1271 660/900 (73%) protein|B3 DNA binding domain containing protein, putative, expressed
TAIR PP10 AT4G32010 @ ARAPORT
AT4G32010.1 @ TAIR
+2 1e-141 445 237/447 (53%) Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780
BRACH PP3 Bradi1g24720.2.p +2 0.0 1361 698/909 (77%) pacid=32795969 transcript=Bradi1g24720.2 locus=Bradi1g24720 ID=Bradi1g24720.2.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0005634nucleus
GO:0003677DNA binding
GO:0008270zinc ion binding



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons