- Transcript BART1_0-u10056.001
- Transcript IDBART1_0-u10056.001
- Gene IDBART1_0-u10056
Barley RTD
Exon Structure of BART1_0-u10056.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 196197765 | 196196752 | - |
| chr2H | 2 | 196198594 | 196198527 | - |
| chr2H | 3 | 196200357 | 196200244 | - |
| chr2H | 4 | 196200943 | 196200894 | - |
| chr2H | 5 | 196201575 | 196201168 | - |
| chr2H | 6 | 196202024 | 196201954 | - |
| chr2H | 7 | 196203345 | 196203171 | - |
| chr2H | 8 | 196204297 | 196204201 | - |
| chr2H | 9 | 196205297 | 196204438 | - |
| chr2H | 10 | 196205912 | 196205811 | - |
| chr2H | 11 | 196206098 | 196206017 | - |
| chr2H | 12 | 196206604 | 196206413 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.75081 | 4.51613 | 8.72467 |
| morex | ETI | 4.40565 | 4.39549 | 0.643358 |
| morex | LEA | 2.72709 | 6.76275 | 6.20456 |
| morex | EPI | 0.302406 | 5.52169 | 1.14515 |
| morex | ROO | 5.82194 | 3.39619 | 3.59154 |
| morex | ROO2 | 6.87207 | 5.54819 | 3.37551 |
| morex | NOD | 0.0474676 | 6.21943 | 3.28958 |
| morex | RAC | 9.38618 | 6.34489 | 6.83678 |
| morex | INF1 | 5.79726 | 9.27875 | 2.56998 |
| morex | INF2 | 7.28733 | 4.08784 | 9.22578 |
| morex | CAR5 | 5.71208 | 0.0265765 | 3.47231 |
| morex | CAR15 | 4.64088 | 1.40706 | 0.0187114 |
| morex | LEM | 6.81093 | 7.1335 | 4.03929 |
| morex | LOD | 6.71656 | 9.80939 | 9.06349 |
| morex | PAL | 4.40593 | 3.59314 | 3.58949 |
| morex | SEN | 0.508334 | 1.87032 | 4.65719 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g37610.1 | +2 | 0.0 | 1271 | 660/900 (73%) | protein|B3 DNA binding domain containing protein, putative, expressed |
| TAIR PP10 | AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR |
+2 | 1e-141 | 445 | 237/447 (53%) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 |
| BRACH PP3 | Bradi1g24720.2.p | +2 | 0.0 | 1361 | 698/909 (77%) | pacid=32795969 transcript=Bradi1g24720.2 locus=Bradi1g24720 ID=Bradi1g24720.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3233 bp)
>BART1_0-u10056.001 3233 150831_barley_pseudomolecules NNNNNNNNCGTCCAAGCAGCCGCAGCAGCAGCACCAACAGCAGCAGCAGCAGGGCCCTTC GCCCGCCTCGCTCCAGCAGCGGCCCAGGATCTGCTTCAACGCGCACTGCAAGGACCCCAA ATCCGAGGGCGCGCGCCACCGCGGCTGGCGCCTCCGCTCCGGCGACTACGCCGAGCTCTG CGACCGATGCTATGGTTCGTTCGAGCATGGGACCTTCTGCGAGACGTTCCACTCGGAGGT GGCCGGATGGAGGAAATGCGAAGCGTGCGGGAAGAGGCTACATTGTGGGTGCATCGTCTC CGTCCATGCGTATGCGCTGCTCGACGCCGGCGGAGTTGACTGCATCCTATGTGCTCGCAA GTCGTATGTGGCAATGGCACCAAGTCAGATGTGGTCAACTCCTACTGTGCATATGCCTCA AAATGTTGCTGACAGAAAGGACAGTTATGTAAAGAGTTGGAGACCTCCTGCGGGCCAGAT TTCAAGTCAGTGGCGACAGAATCACCAGCTGTGGAACATGTCCAGTATACAGACGGACTT GCAGCAACGTCTAGCTTATGAGTTTGATAGGCCAAGTGGCAGTGAAAAATTACCTCCAGG GCGCACTTTTATTCATGCCCAGGAAAAGAAATCCGATGACATGCATGACAGACCAACGAC ACCTGCCGGCATGGGCCAGATTATAAGGGACAGATATGCCAATGGGCTCGGACAGCAAAC AAACATGGATCCGACACACTCCTCTACGCCCTACCAGAGAGAAGGACCAAATCAAAATAG CCTTCATGATCCTAGTCACCATGTAGGAGAAAGTGACCCTTTGTCTTCAAGGAAAGGGAT AGTTTCAGATGGTGGTTCTACTGCATCTACTGGCTTTAAGCTTGATCCACATCATCCATC CATTCTAAAGGATGATGCGGCATCAACCCTGCCGACAATGGGTGGCTACACTATCACTAA TTATCCACCGGTACCTGGACGAAGCGACCATCTCAGAATCATACCTAATAATCCGCAACA ACCACCCACCACGGTGCCCGTCTCAGTAGTGCAGAAACAGTTCTATTCCCATAGTGTCAT TGAGCCCGACTACCAAGCGCAATTCCGTAATGGAAAGCCCAGAATGGAGTCCAGAATGGA TGCAAAGGCGAGATCTCAATTACTTCCCCGCTACTGGCCTAGAATAACAGATAAAGAGCT ACAGCACTTATCGGGAGAGTATCCAAAAAACTCTACTTCGAATTCTGTTATTACTCCTTT GTTCGAGAAAATGTTAAGTGCCAGTGATGCTGGTCGGATTGGTCGTTTGGTGTTGCCAAA GAAATGCGCCGAGGCATACTTCCCCCCAATCTCTCAGCCAGAAGGACTTCCCTTAAAAGT TCAGGATGCCAGTGGTAAGGAATGGGTGTTCCAGTTCCGTTTCTGGCCCAATAATAACAG CAGGATGTATGTATTGGAGGGTGTCACACCTTGCATTCAGTCGATGCACTTACAAGCGGG CGATACAGTAAGTTTCAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTCAGAAA GACAAAGACTCAAGAACAGATATTCCGCCAGGAAGAACCAACAAAGCCTGCAAATGCTGC CCCAAATCTTCCAGATGTGAATGTTAATGTCACCGCTCCAGATTCTAGTCCAAATTCTGC GTTGGCGCGGCCAAATAAAGTCAACACAGAGAACAAAGATACTAGCCCTGTGGAACAAGC AGCTGCCTGTAAAATGGAGAAAACTGGAGTAGCACAAAAGGAAGGGCAGGGAACTGTTCG CTCATCCCCTGGACCTGTCAAGAGAAAAGCAACATCTCTTGGTTCGAAGATTAAACGGTT CCGGATTGATAACGAGGAATCTATGGAATTGAAGATAACATGGGAGGAGGCTCAAGAATT GCTTCGACCTCCTCTGAAGGCCCCATCGGTTGTTATTGTTGATGGCCATGAGTTTGAGGA ATATGAGGAGCCACCAGTACTTGGGAGGAAGACATATTTTGTTACTGACCAATCAGGTGA GAATCATCAATGGGCTCAGTGTGAGGATTGTTCCAAATGGCGGAAACTGCCAGTAGACGC CCTTTTGCCCTCTAAGTGGACCTGTTCTGACAATAAATGGGATCCTGAAAGGACGACTTG TGTCTCTCCACAAGAAGCAAGCATGGAGCAACTTGCAGAGTTGATTCCTATAAAAGCAGG TGCTGCAAAAAAGGCTAAACTGAAGATGGAAACTGACAGTATTGATGTTTCGGATGGGCT GGACACTCTGGCAAACCTTGCTATTCTTGGTGAGGGTGAATCTCTCCCTTCCCAGCCAAC TACAAAGCACCCCCGCCATCGCCCTGGCTGCTCGTGCATTGTGTGCATTCAGCCTCCTAG TGGGAAGGGCCCAAAGCACAAGCAGACGTGCACCTGCAATGTATGTATGACGGTGCGCCG TCGTTTTAGGACACTGATGCTTCGGCGTGAGAAGCGTGCGTCTGAGAAAGAATCGGAAGA GCCGCCTCGCAAGAAAGAGCAAGGCCAGTCGAGCGAGTCGATTCCACAAGATGTGCTGCC GGCTAGCACCAGTCCTACTAGCACTCCCCAAAACGTGAACGGAAATGGTGAAGATGCGGA AGAAACCGTGGAGCATAGCATGGTATCCTCTCCTATGAAGAACCAGATTGACCTGAACAT TCAGCCTGAACGGGAAGACGAGCAGTCACCAAAATCAGATGCGGTCGGTGCAATGAGACT TCCCCGAGAGAACGCAGCCTAGTGCGGCTCACCGTAGTGGTGATAGATAACACCAGATTG AAAACTGTCTATACCAATGGAGATATGCGGCGCCTGGAGTTGTAGTGTAGGTGTTATTAC TTTTTCCATACAAAAGGATCTAGTTTCCTTCCTGTTGCGGGGGACATATTTCCCAGTGTT GATGCTATATCGTGTATACCATAGATCAGTCGGTTGGTGCTGTAGGCAGGCCCTGTTGTA GGTGTTGCCTACCCTGTATGTATGTGTATTGTAAGGGCAGCGCTCTTCGGCACCATGTAA GCGGCATGCATAATTTATTCATGTATCGGCTCAACCATCCAAACTAGTAATGCTTCTAAT GTCAAAACACAGATAAGGTGTCCTTGTTCCGGTTGGCAAAGAAGCGTTATCCTAGATCGT CCCCTGATGGGTGCTATTTTTTCTCATATTTAGCTACTCGTCGATCGTCCCCA
Protein Sequence (926 aa)
>BART1_0-u10056.001 926 150831_barley_pseudomolecules XXXSKQPQQQHQQQQQQGPSPASLQQRPRICFNAHCKDPKSEGARHRGWRLRSGDYAELC DRCYGSFEHGTFCETFHSEVAGWRKCEACGKRLHCGCIVSVHAYALLDAGGVDCILCARK SYVAMAPSQMWSTPTVHMPQNVADRKDSYVKSWRPPAGQISSQWRQNHQLWNMSSIQTDL QQRLAYEFDRPSGSEKLPPGRTFIHAQEKKSDDMHDRPTTPAGMGQIIRDRYANGLGQQT NMDPTHSSTPYQREGPNQNSLHDPSHHVGESDPLSSRKGIVSDGGSTASTGFKLDPHHPS ILKDDAASTLPTMGGYTITNYPPVPGRSDHLRIIPNNPQQPPTTVPVSVVQKQFYSHSVI EPDYQAQFRNGKPRMESRMDAKARSQLLPRYWPRITDKELQHLSGEYPKNSTSNSVITPL FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDASGKEWVFQFRFWPNNNS RMYVLEGVTPCIQSMHLQAGDTVSFSRIDPEGKLVMGFRKTKTQEQIFRQEEPTKPANAA PNLPDVNVNVTAPDSSPNSALARPNKVNTENKDTSPVEQAAACKMEKTGVAQKEGQGTVR SSPGPVKRKATSLGSKIKRFRIDNEESMELKITWEEAQELLRPPLKAPSVVIVDGHEFEE YEEPPVLGRKTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDPERTTC VSPQEASMEQLAELIPIKAGAAKKAKLKMETDSIDVSDGLDTLANLAILGEGESLPSQPT TKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMLRREKRASEKESEE PPRKKEQGQSSESIPQDVLPASTSPTSTPQNVNGNGEDAEETVEHSMVSSPMKNQIDLNI QPEREDEQSPKSDAVGAMRLPRENAA