- Transcript BART1_0-u09734.003
- Transcript IDBART1_0-u09734.003
- Gene IDBART1_0-u09734
Barley RTD
Exon Structure of BART1_0-u09734.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 157578838 | 157578607 | - |
| chr2H | 2 | 157579452 | 157579089 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 3.07657 | 4.29616 |
| morex | ETI | 1.78564 | 1.57152 | 1.57541 |
| morex | LEA | 6.37358 | 11.0456 | 7.28203 |
| morex | EPI | 5.316 | 3.83621 | 4.69851 |
| morex | ROO | 3.46372 | 2.98889 | 3.70047 |
| morex | ROO2 | 1.81307 | 2.93607 | 2.39704 |
| morex | NOD | 5.42078 | 2.18915 | 1.29764 |
| morex | RAC | 0.599841 | 1.33382 | 0.798526 |
| morex | INF1 | 4.52433 | 3.96869 | 7.311 |
| morex | INF2 | 4.04885 | 5.28963 | 5.52379 |
| morex | CAR5 | 6.3295 | 6.56489 | 9.66376 |
| morex | CAR15 | 3.24662 | 0 | 3.25138 |
| morex | LEM | 4.14213 | 0.902142 | 1.72132 |
| morex | LOD | 1.79817 | 1.65536 | 5.69292 |
| morex | PAL | 1.7186 | 1.96805 | 5.39487 |
| morex | SEN | 5.01978 | 5.84539 | 1.83744 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (596 bp)
>BART1_0-u09734.003 596 150831_barley_pseudomolecules CTCCCGTAGAAAAGAAAGGCCAAGGGCGGGCAGGGGGCTATAAAAAAATCTCGTGCTACT GCCCTAATTCCCTTTGGACTTTGGCGTTATATCCATCCTCGAGCCCCTCCCGACTCTCAG CCTCACCCTGCCCGCTGCTCTCTCCTCCGCGCCTGATTCCAGTGGTGCTGCTGCTTCTTC TCAAATCTCCAGGACAGACCAGACACACACACAGGGACACAGGGTAAGGTAAGCATGCTC TGAGTTTCCTCCCCTCGTGTGTGCTTCCATGTTTTCCGTGGGATTTGAGCCCTTGCTCTC TTGCGCTTTCCCTTGGTTGTGATGAGATGGGGGACCTGTGCATCGATCGACCTCTCCCTA GCATTTGCGGAGCAGCTAGCGGCGGAGGTGCTTTCTTCGTCATGGAGTCGCAGCAGCAGC AGCAGCAGATGGAGGCGGTTTCTGCGCCGGCCGCCGCTACGAACGGGGGCGGGGAGCTGA TCGGGTACGTGGACGTGCACGTGCGGAGCGCGCGGGACATTCAGAACATCTGCATCTACC ACAAGCAGGATGTGTACGCGCGCCTGTCGCTGCCGGGGGAGGGCGCGCNNNNNNNN
Protein Sequence (157 aa)
>BART1_0-u09734.003 157 150831_barley_pseudomolecules XXXRALPRQRQARVHILLVVDADVLNVPRAPHVHVHVPDQLPAPVRSGGRRRNRLHLLLL LLRLHDEESTSAASCSANARERSIDAQVPHLITTKGKRKRARAQIPRKTWKHTRGEETQS MLTLPCVPVCVSGLSWRFEKKQQHHWNQARRREQRAG