- Transcript BART1_0-u09734.002
- Transcript IDBART1_0-u09734.002
- Gene IDBART1_0-u09734
Barley RTD
Exon Structure of BART1_0-u09734.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 157578838 | 157578605 | - |
| chr2H | 2 | 157579722 | 157579225 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 16.2138 | 28.1506 | 23.7274 |
| morex | ETI | 15.0664 | 16.8324 | 24.2165 |
| morex | LEA | 35.661 | 28.1948 | 27.207 |
| morex | EPI | 9.9522 | 9.96609 | 11.2524 |
| morex | ROO | 27.0041 | 24.5376 | 15.6015 |
| morex | ROO2 | 11.6996 | 9.88932 | 10.5141 |
| morex | NOD | 38.0614 | 18.1001 | 32.3799 |
| morex | RAC | 13.9802 | 16.2906 | 17.9419 |
| morex | INF1 | 44.2967 | 33.8863 | 39.7317 |
| morex | INF2 | 113.404 | 67.0657 | 89.2369 |
| morex | CAR5 | 55.1417 | 53.4106 | 52.4227 |
| morex | CAR15 | 14.3652 | 13.4378 | 12.6825 |
| morex | LEM | 20.9204 | 21.4897 | 16.8599 |
| morex | LOD | 17.8572 | 17.8784 | 27.6689 |
| morex | PAL | 25.1876 | 23.9475 | 24.2272 |
| morex | SEN | 16.1646 | 11.606 | 14.1848 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (732 bp)
>BART1_0-u09734.002 732 150831_barley_pseudomolecules CGGCACGCAATTTTCTACTATCTCCCCACAACATGCGCAGTCGCCTGACGGCTAAGTGTG CGGTCGCGATACTGCCCATCGTATACTAATCTGAATAATCTAAATCTAAGCATGCCAATA ATACCACCGATTAAACAAACTAATTATCATCATGCCTGTAGGAGTAGATTAGGCTGCTGT GCTGTGGTCTGAGGAGGATGGCTGGCTGGCTGGTAAGGCCAAGCCAAACTAGGCAATAAA AGCGAGCGTAGTTAGGTAAAGGGTGTAGTCCTCCCGTAGAAAAGAAAGGCCAAGGGCGGG CAGGGGGCTATAAAAAAATCTCGTGCTACTGCCCTAATTCCCTTTGGACTTTGGCGTTAT ATCCATCCTCGAGCCCCTCCCGACTCTCAGCCTCACCCTGCCCGCTGCTCTCTCCTCCGC GCCTGATTCCAGTGGTGCTGCTGCTTCTTCTCAAATCTCCAGGACAGACCAGACACACAC ACAGGGACACAGGGTAAGTTGCGGAGCAGCTAGCGGCGGAGGTGCTTTCTTCGTCATGGA GTCGCAGCAGCAGCAGCAGCAGATGGAGGCGGTTTCTGCGCCGGCCGCCGCTACGAACGG GGGCGGGGAGCTGATCGGGTACGTGGACGTGCACGTGCGGAGCGCGCGGGACATTCAGAA CATCTGCATCTACCACAAGCAGGATGTGTACGCGCGCCTGTCGCTGCCGGGGGAGGGCGC GCNNNNNNNNNN
Protein Sequence (134 aa)
>BART1_0-u09734.002 134 150831_barley_pseudomolecules XXXRALPRQRQARVHILLVVDADVLNVPRAPHVHVHVPDQLPAPVRSGGRRRNRLHLLLL LLRLHDEESTSAASCSATYPVSLCVCLVCPGDLRRSSSTTGIRRGGESSGQGEAESREGL EDGYNAKVQRELGQ