- Transcript BART1_0-u09734.001
- Transcript IDBART1_0-u09734.001
- Gene IDBART1_0-u09734
Barley RTD
Exon Structure of BART1_0-u09734.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 157578838 | 157578605 | - |
| chr2H | 2 | 157579722 | 157579230 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.20925 | 2.80699 | 5.36943 |
| morex | ETI | 2.9231 | 2.95271 | 4.06356 |
| morex | LEA | 5.27446 | 2.95104 | 3.47822 |
| morex | EPI | 0.892706 | 2.47333 | 1.33804 |
| morex | ROO | 2.85339 | 2.73182 | 1.45521 |
| morex | ROO2 | 1.17744 | 0.815806 | 1.43458 |
| morex | NOD | 5.68235 | 2.97242 | 2.72371 |
| morex | RAC | 2.24655 | 2.16868 | 1.87602 |
| morex | INF1 | 8.55991 | 7.60001 | 6.67715 |
| morex | INF2 | 15.3214 | 12.5383 | 13.0315 |
| morex | CAR5 | 8.92493 | 10.8484 | 6.43161 |
| morex | CAR15 | 3.37921 | 2.48228 | 2.09273 |
| morex | LEM | 2.57875 | 2.19221 | 1.5994 |
| morex | LOD | 3.64354 | 2.45703 | 2.46285 |
| morex | PAL | 3.0797 | 4.01575 | 3.56711 |
| morex | SEN | 1.3528 | 0.672335 | 1.41823 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (727 bp)
>BART1_0-u09734.001 727 150831_barley_pseudomolecules CGGCACGCAATTTTCTACTATCTCCCCACAACATGCGCAGTCGCCTGACGGCTAAGTGTG CGGTCGCGATACTGCCCATCGTATACTAATCTGAATAATCTAAATCTAAGCATGCCAATA ATACCACCGATTAAACAAACTAATTATCATCATGCCTGTAGGAGTAGATTAGGCTGCTGT GCTGTGGTCTGAGGAGGATGGCTGGCTGGCTGGTAAGGCCAAGCCAAACTAGGCAATAAA AGCGAGCGTAGTTAGGTAAAGGGTGTAGTCCTCCCGTAGAAAAGAAAGGCCAAGGGCGGG CAGGGGGCTATAAAAAAATCTCGTGCTACTGCCCTAATTCCCTTTGGACTTTGGCGTTAT ATCCATCCTCGAGCCCCTCCCGACTCTCAGCCTCACCCTGCCCGCTGCTCTCTCCTCCGC GCCTGATTCCAGTGGTGCTGCTGCTTCTTCTCAAATCTCCAGGACAGACCAGACACACAC ACAGGGACACAGGTTGCGGAGCAGCTAGCGGCGGAGGTGCTTTCTTCGTCATGGAGTCGC AGCAGCAGCAGCAGCAGATGGAGGCGGTTTCTGCGCCGGCCGCCGCTACGAACGGGGGCG GGGAGCTGATCGGGTACGTGGACGTGCACGTGCGGAGCGCGCGGGACATTCAGAACATCT GCATCTACCACAAGCAGGATGTGTACGCGCGCCTGTCGCTGCCGGGGGAGGGCGCGCNNN NNNNNNN
Protein Sequence (110 aa)
>BART1_0-u09734.001 110 150831_barley_pseudomolecules XXXRALPRQRQARVHILLVVDADVLNVPRAPHVHVHVPDQLPAPVRSGGRRRNRLHLLLL LLRLHDEESTSAASCSATCVPVCVSGLSWRFEKKQQHHWNQARRREQRAG