- Transcript BART1_0-u09733.001
- Transcript IDBART1_0-u09733.001
- Gene IDBART1_0-u09733
Barley RTD
Exon Structure of BART1_0-u09733.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 157574810 | 157573594 | . |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 15.494 | 10.3517 | 10.3907 |
| morex | ETI | 36.1048 | 36.266 | 47.3915 |
| morex | LEA | 15.8314 | 12.7901 | 21.3402 |
| morex | EPI | 43.5007 | 44.8215 | 44.3357 |
| morex | ROO | 22.494 | 12.1491 | 5.82406 |
| morex | ROO2 | 28.9762 | 28.2736 | 26.4939 |
| morex | NOD | 19.9898 | 39.0955 | 53.4827 |
| morex | RAC | 33.0239 | 31.5207 | 33.8659 |
| morex | INF1 | 13.4059 | 15.3438 | 18.3991 |
| morex | INF2 | 22.6079 | 21.8192 | 24.1036 |
| morex | CAR5 | 20.3344 | 20.2375 | 24.5102 |
| morex | CAR15 | 5.13638 | 4.8897 | 5.45437 |
| morex | LEM | 44.8378 | 42.5294 | 33.8178 |
| morex | LOD | 41.5586 | 48.2348 | 61.5883 |
| morex | PAL | 53.0658 | 41.5389 | 48.5858 |
| morex | SEN | 45.2449 | 33.0367 | 29.5737 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g39620.2 | -3 | 2e-65 | 216 | 171/259 (66%) | protein|C2 domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g23257.3.p | -3 | 1e-81 | 258 | 204/257 (79%) | pacid=32801215 transcript=Bradi1g23257.3 locus=Bradi1g23257 ID=Bradi1g23257.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1217 bp)
>BART1_0-u09733.001 1217 150831_barley_pseudomolecules AACTATATGAACAATTTTTATTTTTATTCGGCTTGTAAAAACTATGCTATTTTATTCGGT CTAAATTATGTTATTTAATTCAAACTATGCAAAATAAAACGACCAACCGGCACATATAGG TCGGCACGCTGGACGAGTACGGACCCATATCTAAAACAGGCGTCCATTTAGGTCGTCCAT TGAAGTTGCTCTTAACAAGATTGCAGATATAGCAAATCAAGTTCAGATGTCTATATATTG AAGAAAAGAAGCCAAACATTTTCTCATTAGAGTAGCGAGCGATACATTAAAAGAAAGACC GGGCAGCTAATTTCCAAATGCGTCTTGCGATCTGACTGACGAAGCCTAAATAAAACAACA GCATGAGAAAATTGTTATTCTTCTGCGCTACCAAGATTTTCAGCTGAGACTGATGACTGC AAATGCCATCTTCTAGTCCGGCGTCCGGGCTCGTTCGGCTTAGAAGAAGGCTCGGCTTCC GTAGAACACCTTGGGAGATTTCTCCTGCGCACCCCCGGCCGTCGGTTTCTTCGCCGCCGC GCTCGAGTCGGTGCCGCTGGAATCAGTGGGCGAGGCGGCGGCGGGGCCGCTCCCGCTCTT GTCGCTGCCATTGTCCAGGTCCAGCGGGAGCTTCATCTTGGCCAGCGACTCCGTGAACTG CTGCATGCTCTTCATGTACATGTCCATGATCTCCTTCTGGTTCACTTGCACCTCCTGCTC GAAGTTGAAGCTCATCGCCGGCGGAGGTTTGTCCACCGCGTTCTCAGACACAGTGCTGGG TGAGTTCACCGCCGGGCTCTCCTGAACGGTGTGAGACGAATCGACCTCCGCCGCGTCCGC CGCGTCTGAGGCCTTCTCCTTCTGGCCTGCTGAGGAGAGGGCGTTTCCTGACGGCTCGGA CGGGTTGGACTGCGGGGTAGCCGGGACGGCCGCGGCCGGGGACTCCGTGGTGGACACGCT GCTGACTGCCGTCTCGCTCCGGAAGGCGCCGGCCGAGGAGTCGGCGGTGCTGTAGTCCGT CGAGAAGCTCTGCACAACTCGCACGCCGGCGTCGTGGGACTCGGTGGCGGCGCCATCCAC GTCCTCTGAGGTCAGGAGGCTCTCGGAGCTCTGCGTTTCCATGGCCGTGCACGGCAGACC AACATATTCCGAGAGCATAATCTGGTTTTCCTCCACAAGATTCATGTCAGGGAACTCCAT ATTCTNNNNNNNNNNNN
Protein Sequence (220 aa)
>BART1_0-u09733.001 220 150831_barley_pseudomolecules METQSSESLLTSEDVDGAATESHDAGVRVVQSFSTDYSTADSSAGAFRSETAVSSVSTTE SPAAAVPATPQSNPSEPSGNALSSAGQKEKASDAADAAEVDSSHTVQESPAVNSPSTVSE NAVDKPPPAMSFNFEQEVQVNQKEIMDMYMKSMQQFTESLAKMKLPLDLDNGSDKSGSGP AAASPTDSSGTDSSAAAKKPTAGGAQEKSPKVFYGSRAFF