Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU2Hr1G036050	80.2	.	-	975	4636	Partial-Overlap

Transcripts from Gene BART1_0-u09733

Transcript	Length(bp)	Description
BART1_0-u09733.001	1217	1217 bp MSTRG.9733.1 MSTRG.9733

Exon Structure of BART1_0-u09733

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os07g39620.2	-3	2e-65	216	171/259 (66%)	protein|C2 domain containing protein, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi1g23257.3.p	-3	1e-81	258	204/257 (79%)	pacid=32801215 transcript=Bradi1g23257.3 locus=Bradi1g23257 ID=Bradi1g23257.3.v3.1 annot-version=v3.1

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons