- Transcript BART1_0-u05042.014
- Transcript IDBART1_0-u05042.014
- Gene IDBART1_0-u05042
Barley RTD
Exon Structure of BART1_0-u05042.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 501617123 | 501616764 | - |
| chr1H | 2 | 501617385 | 501617276 | - |
| chr1H | 3 | 501618080 | 501617488 | - |
| chr1H | 4 | 501618560 | 501618447 | - |
| chr1H | 5 | 501619133 | 501618955 | - |
| chr1H | 6 | 501619591 | 501619330 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 7.74469 | 6.9916 | 9.13055 |
| morex | ETI | 27.457 | 28.7971 | 13.2057 |
| morex | LEA | 14.2118 | 6.23728 | 7.73307 |
| morex | EPI | 25.0685 | 15.0136 | 26.1334 |
| morex | ROO | 2.75636 | 3.64759 | 2.44028 |
| morex | ROO2 | 0.545761 | 0.51894 | 0.259336 |
| morex | NOD | 15.3783 | 13.0381 | 4.22008 |
| morex | RAC | 13.1084 | 14.0781 | 12.0848 |
| morex | INF1 | 4.9245 | 7.08592 | 7.14619 |
| morex | INF2 | 11.8208 | 12.4249 | 14.1419 |
| morex | CAR5 | 11.7986 | 7.11654 | 13.903 |
| morex | CAR15 | 0.363635 | 0 | 0 |
| morex | LEM | 5.32972 | 5.04799 | 5.44381 |
| morex | LOD | 8.69537 | 3.90607 | 11.2426 |
| morex | PAL | 7.53288 | 8.22811 | 10.8346 |
| morex | SEN | 32.3734 | 20.1348 | 18.4514 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1618 bp)
>BART1_0-u05042.014 1618 150831_barley_pseudomolecules CCGTGCTTTACCTTATCTGCCGCATTCCAACTCATGTTGTTATTCTGAGCAAAACTCGAC TCGCTCGCTCGTCTCGACATCTGCACCGGATCGAGCTCAGCAAAGCCCGAGCCGGAGGCG CTCGTCTGCCCGGGGAGCGGCGCCATGCGGGTCCGCCTCTTCCTCTGAACCGGGCAAGCG CGAGCCGCCTTCTTCCTCCGGCTCGGCGTCGGCGGCGACGACGAGCGTCGGTGGCGGCAT AGCACGGTCCAGCGACGAGCAGGATTTCATGTAGAGGAGGGCAATCTGTTCTCATCCCCT CGACTTCCAGCAGAGCGTGCGAAGTCTCGTCCGCAGCAACGACGACGCCGGCTCAGGCAG CCGCGGGCACGGCAATGCCGGTTCCTCTTGCCCCTTACCCAACTCCTCCTGCGCCCTTCA CGCCACCCGCTCCCAATGCAGGGGCTCAAAGCCAACTTGTCTGCTCTGGGTGCCGGAATC TGCTCATGTATCCTGCCGGCGCAACGTCGGTATGCTGCGCGGTTTGCAGTACCGTGACCG CTGTTCCGGCTCCTGGGACCGAGATGGCGCAGCTAGTTTGCGGAGGATGCCACACTCTTC TGATGTACATACGTGGTGCCACAAGTGTACAGTGTTCTTGCTGCCACACTGTCAACCTGG CAATGGAAGGTATGTAAAATTGACCAAAGCTTTTCTTTCTTCCTCTCTTCCTGGGTTGCA AGTGGTATATATGCCAGCCGGAGGCTGGATCTTTCAAAAAAAAAAAGTGGTATATTCTGC TGGTTTTGATTCCCTTTCCGAAACGATGTGGACATTGATTTGTGTATGCAAAATCCTCCT TCTGGACAGAACGTATTCTGAGGTTGGAAAAGCTCTAGCAATCAGTCGATAACCGTTAAC ATCGTAAAATTGGCTTATCCTGAAGTCGCACTCATCAAAATTGGACAGTAGGATGTATGC ATTTGTTGTGATGCAGAAAACAAAAGGTTTGATAAGGATCTCCTGGATCTACCAAAAGTT TGATGCATATCTCCTAGTTTTTACTATAAGTCTGACAAACATGTCCTACAGTTACCGAAT GATACACAAACACAAAGATTGAAAGATACCACTAGCATTGGGTCCTGACTTCTGAAGATG CTCTACAGCGAATCAGGTTGCGCATGTAAACTGTGGGAGTTGCCGAATGCTGCTCATGTA CCAGTACGGCGCAAGGTCCGTCAAATGTGCAGTCTGCAGTTTCGTGACATCAGTTGGGGC ATCATCGGGTGCAGAGCAGAAGCCCAGCAACTGAAATCCTGCAAGTTCATTACGAAGGCA GCTTCCCGAAATAAGAATGCTTTGAGTGCACATGTATAGAGTTCTTCCCAGAAGCAACCT TTTCCTCCCCTCTCCATTTCTCCCTTCGTTGGACCTGGCGAGCTTGCGGAATAAACAAGA GTTTTTGGTAATACATAGTTGCTCAAAATTCGTCGAATCATCTGTGTAACTGGGTCAGAC AGATACATGAACCCACCATGTTTATGTTCAAATTTAGCTTCTTTTACTTGTGTTCTATAT ATTTCAGATTTTTTTTCTTGTGGTCATCGGAAGAATTTCTTCAGATGTGCTTTGCCGT
Protein Sequence ( aa)
>BART1_0-u05042.014 150831_barley_pseudomolecules