- Transcript BART1_0-u05042.006
- Transcript IDBART1_0-u05042.006
- Gene IDBART1_0-u05042
Barley RTD
Exon Structure of BART1_0-u05042.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 501617123 | 501616294 | - |
| chr1H | 2 | 501617564 | 501617276 | - |
| chr1H | 3 | 501618289 | 501617650 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.592117 | 0.503347 |
| morex | ETI | 0.531382 | 1.03919 | 0.660464 |
| morex | LEA | 0.490232 | 0.270367 | 0 |
| morex | EPI | 0 | 0.926457 | 0.541809 |
| morex | ROO | 0.199526 | 0 | 0 |
| morex | ROO2 | 0 | 0.0611834 | 0 |
| morex | NOD | 0.569831 | 0.275797 | 0 |
| morex | RAC | 0.058897 | 0.544847 | 0.268816 |
| morex | INF1 | 0.173666 | 0.395327 | 0 |
| morex | INF2 | 0.630161 | 0.604988 | 0.52631 |
| morex | CAR5 | 0.149952 | 1.2333 | 0.450915 |
| morex | CAR15 | 0 | 0 | 0.113266 |
| morex | LEM | 0 | 0 | 0.101358 |
| morex | LOD | 0 | 0 | 0.222364 |
| morex | PAL | 0 | 0.119627 | 0 |
| morex | SEN | 3.1793 | 0.866904 | 0.513496 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1759 bp)
>BART1_0-u05042.006 1759 150831_barley_pseudomolecules GAAACGCAACATCTCGTTTATCTGTGCACTTAACTTCTGAAGTTTACCAAGAAAGGACGA TTTTGCATGCATATTTCACCACACTTGCAGATCAAGGGGGTTAAAAATGTAACCCCTTAA ACCAATCCAATCCAAAACGCTTTGCATTAGCTGGAAACTATCCTGAAGTGCGGTTCTCTG AATGTATTTTCCACCCTGATTCGGTGCAGGGACCGAGATGGCGCAGCTAGTTTGCGGAGG ATGCCACACTCTTCTGATGTACATACGTGGTGCCACAAGTGTACAGTGTTCTTGCTGCCA CACTGTCAACCTGGCAATGGAAGGTATGTAAAATTGACCAAAGCTTTTCTTTCTTCCTCT CTTCCTGGGTTGCAAGTGGTATATATGCCAGCCGGAGGCTGGATCTTTCAAAAAAAAAAA GTGGTATATTCTGCTGGTTTTGATTCCCTTTCCGAAACGATGTGGACATTGATTTGTGTA TGCAAAATCCTCCTTCTGGACAGAACGTATTCTGAGGTTGGAAAAGCTCTAGCAATCAGT CGATAACCGTTAACATCGTAAAATTGGCTTATCCTGAAGTCGCACTCATCAAAATTGGAC AGTAGGATGTATGCATTTGTTGTGATGCAGAAAACAAAAGTTACCGAATGATACACAAAC ACAAAGATTGAAAGATACCACTAGCATTGGGTCCTGACTTCTGAAGATGCTCTACAGGTT CTAAGAACTCACAAGGATGAGTGCATAGAGTTGATGTGTGCTCATCAAATCTGAAATACT CTCAATGACAAATTTTATATATCTTGTGCTTGGCCGCAGCGAATCAGGTTGCGCATGTAA ACTGTGGGAGTTGCCGAATGCTGCTCATGTACCAGTACGGCGCAAGGTCCGTCAAATGTG CAGTCTGCAGTTTCGTGACATCAGTTGGGGCATCATCGGGTGCAGAGCAGAAGCCCAGCA ACTGAAATCCTGCAAGTTCATTACGAAGGCAGCTTCCCGAAATAAGAATGCTTTGAGTGC ACATGTATAGAGTTCTTCCCAGAAGCAACCTTTTCCTCCCCTCTCCATTTCTCCCTTCGT TGGACCTGGCGAGCTTGCGGAATAAACAAGAGTTTTTGGTAATACATAGTTGCTCAAAAT TCGTCGAATCATCTGTGTAACTGGGTCAGACAGATACATGAACCCACCATGTTTATGTTC AAATTTAGCTTCTTTTACTTGTGTTCTATATATTTCAGATTTTTTTTCTTGTGGTCATCG GAAGAATTTCTTCAGATGTGCTTTGCCGTGCGTATTCTTGAACCGATCTATATCACTGCA GACATGATCATGAACATGAACAGTTTACAAACACAGAAAAGTCCAAATGATGCATGGTTA GGGTGTGCAAACACATCAGAGCTGATGTTGATTGCAAGGACACAGGATTGGGTGAGTGTG GGGCACCATCTCTCTGATTCTTGCCCAACTCTGAATCTACAGCCGATGGCATGTCCCAGC AAGCAAACAGCTTGTGGTGATCCGATGGCATGTCATGCATGATGCATCTGGTTTGACACT GAGAAGGACTGTCAGTCCATGACCACTCTATCAATGCACACAATAATTGCAAGGAAAGTT GTGCAGAAAGGTTTAGAGAACACAATGATGTAAAGGCAGGCATAGATGGCGCTCAGTCGC GTCAGCACTCAGTGCTAGTAACAGCTCAGAAACATACTCGTACTACTGAACAGCAGCATC ACTATTCATGTGTTTTTTC
Protein Sequence (111 aa)
>BART1_0-u05042.006 111 150831_barley_pseudomolecules MPAFTSLCSLNLSAQLSLQLLCALIEWSWTDSPSQCQTRCIMHDMPSDHHKLFACWDMPS AVDSELGKNQRDGAPHSPNPVSLQSTSALMCLHTLTMHHLDFSVFVNCSCS