- Transcript BART1_0-u05042.004
- Transcript IDBART1_0-u05042.004
- Gene IDBART1_0-u05042
Barley RTD
Exon Structure of BART1_0-u05042.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 501617123 | 501616289 | - |
| chr1H | 2 | 501617786 | 501617276 | - |
| chr1H | 3 | 501618080 | 501617967 | - |
| chr1H | 4 | 501618560 | 501618447 | - |
| chr1H | 5 | 501619750 | 501618955 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.1217 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0.151974 | 0.197974 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.101598 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2370 bp)
>BART1_0-u05042.004 2370 150831_barley_pseudomolecules CCAAAACCACATGTTGCTGCACAGGATTGTTGACGGAGATTTCTATAAACGAAAACGAAA GCAAAAAAAATTACACAGAACAGGATAGCGTAGTGAGTTTCGACGGGGCCCACATGGCAT AGGGGATAAGAAAGAGAATCCACGTTCCCAGCCACAGTGCCGTGCTTTACCTTATCTGCC GCATTCCAACTCATGTTGTTATTCTGAGCAAAACTCGACTCGCTCGCTCGTCTCGACATC TGCACCGGATCGAGCTCAGCAAAGCCCGAGCCGGAGGCGCTCGTCTGCCCGGGGAGCGGC GCCATGCGGGTCCGCCTCTTCCTCTGAACCGGGCAAGCGCGAGCCGCCTTCTTCCTCCGG CTCGGCGTCGGCGGCGACGACGAGCGTCGGTGGCGGCATAGCACGGTCCAGCGACGAGCA GGTGATTCGGCGCCCAGCTCTGCTGCCGCGACGAGCGCTGAAGGCGGCTCTCCGTCTGTC TAATTTGACGCTCGATTTGCCTCAGGCCTGCACGGCTCAACTGTACCTGGCCTTGCTATC ATCTTGATGATTCATACTACACCTTTTCCCCGGTAGAATCGCGGTGTTCTCACCGGAATC TCCCACAATTTATGCAGGATTTCATGTAGAGGAGGGCAATCTGTTCTCATCCCCTCGACT TCCAGCAGAGCGTGCGAAGTCTCGTCCGCAGCAACGACGACGCCGGCTCAGGCAGCCGCG GGCACGGCAATGCCGGTTCCTCTTGCCCCTTACCCAACTCCTCCTGCGCCCTTCACGCCA CCCGCTCCCAATGCAGGGGCTCAAAGCCAACTTGTCTGCTCTGGGTGCCGGAATCTGCTC ATGTATCCTGCCGGCGCAACGTCGGTATGCTGCGCGGTTTGCAGTACCGTGACCGCTGTT CCGGCTCCTGGGACCGAGATGGCGCAGCTAGTTTGCGGAGGATGCCACACTCTTCTGATG TACATACGTGGTGCCACAAGTGTACAGTGTTCTTGCTGCCACACTGTCAACCTGGCAATG GAAGAACGTATTCTGAGGTTGGAAAAGCTCTAGCAATCAGTCGATAACCGTTAACATCGT AAAATTGGCTTATCCTGAAGTCGCACTCATCAAAATTGGACAGTAGGATGTATGCATTTG TTGTGATGCAGAAAACAAAAGGTTTGATAAGGATCTCCTGGATCTACCAAAAGTTTGATG CATATCTCCTAGTTTTTACTATAAGTCTGACAAACATGTCCTACAGTTACCGAATGATAC ACAAACACAAAGATTGAAAGATACCACTAGCATTGGGTCCTGACTTCTGAAGATGCTCTA CAGGTTCTAAGAACTCACAAGGATGAGTGCATAGAGTTGATGTGTGCTCATCAAATCTGA AATACTCTCAATGACAAATTTTATATATCTTGTGCTTGGCCGCAGCGAATCAGGTTGCGC ATGTAAACTGTGGGAGTTGCCGAATGCTGCTCATGTACCAGTACGGCGCAAGGTCCGTCA AATGTGCAGTCTGCAGTTTCGTGACATCAGTTGGGGCATCATCGGGTGCAGAGCAGAAGC CCAGCAACTGAAATCCTGCAAGTTCATTACGAAGGCAGCTTCCCGAAATAAGAATGCTTT GAGTGCACATGTATAGAGTTCTTCCCAGAAGCAACCTTTTCCTCCCCTCTCCATTTCTCC CTTCGTTGGACCTGGCGAGCTTGCGGAATAAACAAGAGTTTTTGGTAATACATAGTTGCT CAAAATTCGTCGAATCATCTGTGTAACTGGGTCAGACAGATACATGAACCCACCATGTTT ATGTTCAAATTTAGCTTCTTTTACTTGTGTTCTATATATTTCAGATTTTTTTTCTTGTGG TCATCGGAAGAATTTCTTCAGATGTGCTTTGCCGTGCGTATTCTTGAACCGATCTATATC ACTGCAGACATGATCATGAACATGAACAGTTTACAAACACAGAAAAGTCCAAATGATGCA TGGTTAGGGTGTGCAAACACATCAGAGCTGATGTTGATTGCAAGGACACAGGATTGGGTG AGTGTGGGGCACCATCTCTCTGATTCTTGCCCAACTCTGAATCTACAGCCGATGGCATGT CCCAGCAAGCAAACAGCTTGTGGTGATCCGATGGCATGTCATGCATGATGCATCTGGTTT GACACTGAGAAGGACTGTCAGTCCATGACCACTCTATCAATGCACACAATAATTGCAAGG AAAGTTGTGCAGAAAGGTTTAGAGAACACAATGATGTAAAGGCAGGCATAGATGGCGCTC AGTCGCGTCAGCACTCAGTGCTAGTAACAGCTCAGAAACATACTCGTACTACTGAACAGC AGCATCACTATTCATGTGTTTTTTCCTGTT
Protein Sequence (111 aa)
>BART1_0-u05042.004 111 150831_barley_pseudomolecules MPAFTSLCSLNLSAQLSLQLLCALIEWSWTDSPSQCQTRCIMHDMPSDHHKLFACWDMPS AVDSELGKNQRDGAPHSPNPVSLQSTSALMCLHTLTMHHLDFSVFVNCSCS