- Transcript BART1_0-u05042.003
- Transcript IDBART1_0-u05042.003
- Gene IDBART1_0-u05042
Barley RTD
Exon Structure of BART1_0-u05042.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 501617123 | 501616289 | - |
| chr1H | 2 | 501617786 | 501617276 | - |
| chr1H | 3 | 501618080 | 501617967 | - |
| chr1H | 4 | 501619133 | 501618447 | - |
| chr1H | 5 | 501619642 | 501619330 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.72404 | 2.08797 | 1.7646 |
| morex | ETI | 7.13638 | 7.89871 | 4.93349 |
| morex | LEA | 3.44764 | 1.00391 | 2.34251 |
| morex | EPI | 11.2756 | 5.2655 | 7.88882 |
| morex | ROO | 0.646091 | 0.878358 | 0.66212 |
| morex | ROO2 | 0.0511955 | 0.107228 | 0 |
| morex | NOD | 4.05268 | 3.98955 | 1.31641 |
| morex | RAC | 3.44841 | 4.08648 | 5.05886 |
| morex | INF1 | 1.33633 | 2.63893 | 1.94315 |
| morex | INF2 | 3.63393 | 3.80248 | 4.30545 |
| morex | CAR5 | 3.13655 | 3.46784 | 2.79486 |
| morex | CAR15 | 0.138057 | 0.190248 | 0 |
| morex | LEM | 2.28693 | 1.46955 | 1.545 |
| morex | LOD | 2.93196 | 1.7681 | 3.81363 |
| morex | PAL | 2.4765 | 2.95707 | 3.47794 |
| morex | SEN | 10.9849 | 8.06112 | 6.6084 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2460 bp)
>BART1_0-u05042.003 2460 150831_barley_pseudomolecules CCCACATGGCATAGGGGATAAGAAAGAGAATCCACGTTCCCAGCCACAGTGCCGTGCTTT ACCTTATCTGCCGCATTCCAACTCATGTTGTTATTCTGAGCAAAACTCGACTCGCTCGCT CGTCTCGACATCTGCACCGGATCGAGCTCAGCAAAGCCCGAGCCGGAGGCGCTCGTCTGC CCGGGGAGCGGCGCCATGCGGGTCCGCCTCTTCCTCTGAACCGGGCAAGCGCGAGCCGCC TTCTTCCTCCGGCTCGGCGTCGGCGGCGACGACGAGCGTCGGTGGCGGCATAGCACGGTC CAGCGACGAGCAGGATTTCATGTAGAGGAGGGCAATCTGTTCTCATCCCCTCGACTTCCA GCAGAGCGTGCGAAGTCTCGTCCGCAGCAACGACGACGCCGGCTCAGGCAGCCGCGGGCA CGGCAATGCCGGTTCCTCTTGCCCCTTACCCAACTCCTCCTGCGCCCTTCACGCCACCCG CTCCCAATGCAGGTATGGTCGCCGACTGGGGGTACCGCAAGAACGGAGAAATCTTTGGCA ATCATTCGATGCTCCCCCTTTTTCTGTTTTTTTTTATATAAATTTATTTCATGTTTCTTA GCCACCCAGAAAACCAAGATGTTAACGTTCTGGCTTCTTCATGATTTTTTTTTTCTTACG AAAAGTCTATCGGAACTGAATTTTCATGCTGCAGCTCCTTCTGCTGTTTTTAGTCTCCGA AGTTGTGATAGAACAGATTAAGCCCAAGATATCGATTAAGCCGTACATGTTTCTCTGCTG ATTTTGCCCTTGCAATGCTTTTCTCAAATGTGACTTTTGGTTATTGGTAGGTGAGCTTCA GCCACTGAAATTTCATAACTAAGGTTCCATGCTTGAGCAATTTCAGGGGCTCAAAGCCAA CTTGTCTGCTCTGGGTGCCGGAATCTGCTCATGTATCCTGCCGGCGCAACGTCGGTATGC TGCGCGGTTTGCAGTACCGTGACCGCTGTTCCGGCTCCTGGGACCGAGATGGCGCAGCTA GTTTGCGGAGGATGCCACACTCTTCTGATGTACATACGTGGTGCCACAAGTGTACAGTGT TCTTGCTGCCACACTGTCAACCTGGCAATGGAAGAACGTATTCTGAGGTTGGAAAAGCTC TAGCAATCAGTCGATAACCGTTAACATCGTAAAATTGGCTTATCCTGAAGTCGCACTCAT CAAAATTGGACAGTAGGATGTATGCATTTGTTGTGATGCAGAAAACAAAAGGTTTGATAA GGATCTCCTGGATCTACCAAAAGTTTGATGCATATCTCCTAGTTTTTACTATAAGTCTGA CAAACATGTCCTACAGTTACCGAATGATACACAAACACAAAGATTGAAAGATACCACTAG CATTGGGTCCTGACTTCTGAAGATGCTCTACAGGTTCTAAGAACTCACAAGGATGAGTGC ATAGAGTTGATGTGTGCTCATCAAATCTGAAATACTCTCAATGACAAATTTTATATATCT TGTGCTTGGCCGCAGCGAATCAGGTTGCGCATGTAAACTGTGGGAGTTGCCGAATGCTGC TCATGTACCAGTACGGCGCAAGGTCCGTCAAATGTGCAGTCTGCAGTTTCGTGACATCAG TTGGGGCATCATCGGGTGCAGAGCAGAAGCCCAGCAACTGAAATCCTGCAAGTTCATTAC GAAGGCAGCTTCCCGAAATAAGAATGCTTTGAGTGCACATGTATAGAGTTCTTCCCAGAA GCAACCTTTTCCTCCCCTCTCCATTTCTCCCTTCGTTGGACCTGGCGAGCTTGCGGAATA AACAAGAGTTTTTGGTAATACATAGTTGCTCAAAATTCGTCGAATCATCTGTGTAACTGG GTCAGACAGATACATGAACCCACCATGTTTATGTTCAAATTTAGCTTCTTTTACTTGTGT TCTATATATTTCAGATTTTTTTTCTTGTGGTCATCGGAAGAATTTCTTCAGATGTGCTTT GCCGTGCGTATTCTTGAACCGATCTATATCACTGCAGACATGATCATGAACATGAACAGT TTACAAACACAGAAAAGTCCAAATGATGCATGGTTAGGGTGTGCAAACACATCAGAGCTG ATGTTGATTGCAAGGACACAGGATTGGGTGAGTGTGGGGCACCATCTCTCTGATTCTTGC CCAACTCTGAATCTACAGCCGATGGCATGTCCCAGCAAGCAAACAGCTTGTGGTGATCCG ATGGCATGTCATGCATGATGCATCTGGTTTGACACTGAGAAGGACTGTCAGTCCATGACC ACTCTATCAATGCACACAATAATTGCAAGGAAAGTTGTGCAGAAAGGTTTAGAGAACACA ATGATGTAAAGGCAGGCATAGATGGCGCTCAGTCGCGTCAGCACTCAGTGCTAGTAACAG CTCAGAAACATACTCGTACTACTGAACAGCAGCATCACTATTCATGTGTTTTTTCCTGTT
Protein Sequence (111 aa)
>BART1_0-u05042.003 111 150831_barley_pseudomolecules MPAFTSLCSLNLSAQLSLQLLCALIEWSWTDSPSQCQTRCIMHDMPSDHHKLFACWDMPS AVDSELGKNQRDGAPHSPNPVSLQSTSALMCLHTLTMHHLDFSVFVNCSCS