- Transcript BART1_0-u04235.013
- Transcript IDBART1_0-u04235.013
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454318681 | 454318452 | + |
| chr1H | 2 | 454319154 | 454318910 | + |
| chr1H | 3 | 454321148 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 14.484 | 9.06054 | 6.9241 |
| morex | ETI | 21.5768 | 13.6054 | 21.3974 |
| morex | LEA | 10.475 | 9.74912 | 35.8484 |
| morex | EPI | 21.928 | 26.3275 | 18.8642 |
| morex | ROO | 42.5138 | 13.5827 | 2.19872 |
| morex | ROO2 | 4.02709 | 16.2978 | 16.1739 |
| morex | NOD | 55.7513 | 35.7372 | 136.237 |
| morex | RAC | 23.0116 | 14.4177 | 11.9192 |
| morex | INF1 | 4.49619 | 5.77282 | 6.84178 |
| morex | INF2 | 3.09436 | 4.41982 | 5.67735 |
| morex | CAR5 | 2.99379 | 12.1043 | 6.46729 |
| morex | CAR15 | 0.61694 | 1.47285 | 0 |
| morex | LEM | 26.4741 | 17.4648 | 17.0504 |
| morex | LOD | 19.6842 | 18.12 | 15.3722 |
| morex | PAL | 33.6874 | 28.0911 | 20.9441 |
| morex | SEN | 22.9973 | 17.7651 | 30.6157 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.2 | +2 | 2e-33 | 122 | 56/77 (73%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +2 | 3e-39 | 137 | 83/165 (50%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (979 bp)
>BART1_0-u04235.013 979 150831_barley_pseudomolecules GCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGG GACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGC AAAGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGG GGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGATAAAATGAA AATAGTCCAGCAAGAGAACTCTGCAAAAGATCAAATTATCACATCCGTGTATAAACATTT ATCAAATACTTCGTGATTTGGTAATTAATTAGTCCAACCTATTAAGAACGATGATTTCTG CTTATAAAAGTAAAATTTCCCAGCTATCCTCAAGCTGTCCCTTCAAACCGACATGGCACC CAAGATGCACAGCAACGATAACACTGGACTTTCTGTTGACTCGTCCTCTTCTCAGGCACA CAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGTCGGAACATG AGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTAGTTTCCCCT GTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTGTTAGATAGT ACTACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGACGTCTGAACTC TGTATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCATGCCCAGGTAA GTACATTATGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGAAGGACAAGG CATGTGTTCGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTATAAAAAATGTAA GACCTTTTTTGACAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTAAAGGGTCGTCAA AACTCAATACAAAACCAAG
Protein Sequence (104 aa)
>BART1_0-u04235.013 104 150831_barley_pseudomolecules QGSALEFTRVVDAKRQVVAGTLHNLMVEVVDSGKKSMYKAKVWVKPWQNFKAVVEFRHAG DFQSESSVASDGSTGQDKMKIVQQENSAKDQIITSVYKHLSNTS