Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU1Hr1G063320	98.0	+	+	4315	-88	Partial-Overlap

Transcripts from Gene BART1_0-u04235

Transcript	Length(bp)	Description
BART1_0-u04235.001	1844	1844 bp MSTRG.4235.1 MSTRG.4235
BART1_0-u04235.002	1752	1752 bp MSTRG.4235.2 MSTRG.4235
BART1_0-u04235.003	2406	2406 bp MSTRG.4235.3 MSTRG.4235
BART1_0-u04235.004	1822	1822 bp MSTRG.4235.4 MSTRG.4235
BART1_0-u04235.005	1115	1115 bp MSTRG.4235.5 MSTRG.4235
BART1_0-u04235.006	2502	2502 bp MSTRG.4235.6 MSTRG.4235
BART1_0-u04235.007	2207	2207 bp MSTRG.4235.7 MSTRG.4235
BART1_0-u04235.008	1202	1202 bp MSTRG.4235.8 MSTRG.4235
BART1_0-u04235.009	1393	1393 bp MSTRG.4235.9 MSTRG.4235
BART1_0-u04235.010	546	546 bp MSTRG.4235.10 MSTRG.4235
BART1_0-u04235.011	2183	2183 bp MSTRG.4235.11 MSTRG.4235
BART1_0-u04235.012	1034	1034 bp MSTRG.4235.12 MSTRG.4235
BART1_0-u04235.013	979	979 bp MSTRG.4235.13 MSTRG.4235

Exon Structure of BART1_0-u04235

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os05g33880.1	+3	6e-42	152	85/152 (56%)	protein|cysteine proteinase inhibitor precursor protein, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi2g25507.1.p	+3	6e-57	193	114/146 (78%)	pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0090305	nucleic acid phosphodiester bond hydrolysis
GO:0046914	transition metal ion binding
GO:0042802	identical protein binding
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005783	endoplasmic reticulum
GO:0008233	peptidase activity
GO:0005576	extracellular region
GO:0006952	defense response
GO:0006972	hyperosmotic response
GO:0020037	heme binding
GO:0009414	response to water deprivation
GO:0003676	nucleic acid binding
GO:0008408	3'-5' exonuclease activity
GO:0009409	response to cold
GO:0006979	response to oxidative stress
GO:0005515	protein binding
GO:0004869	cysteine-type endopeptidase inhibitor activity
GO:0005506	iron ion binding
GO:0006508	proteolysis
GO:0016021	integral component of membrane
GO:0010951	negative regulation of endopeptidase activity
GO:0005829	cytosol
GO:0055114	oxidation-reduction process
GO:0050897	cobalt ion binding

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons