- Transcript BART1_0-u04235.012
- Transcript IDBART1_0-u04235.012
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454318965 | 454318452 | + |
| chr1H | 2 | 454319154 | 454319063 | + |
| chr1H | 3 | 454321072 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.4907 | 13.7223 | 12.4277 |
| morex | ETI | 9.50046 | 14.1369 | 9.21457 |
| morex | LEA | 12.2804 | 14.06 | 7.31886 |
| morex | EPI | 3.91262 | 8.6332 | 6.74653 |
| morex | ROO | 0.205953 | 3.44086 | 2.44129 |
| morex | ROO2 | 3.72398 | 3.51268 | 3.00811 |
| morex | NOD | 7.28032 | 17.6793 | 9.75526 |
| morex | RAC | 16.3104 | 8.25122 | 14.4261 |
| morex | INF1 | 6.80785 | 0.0306251 | 2.86136 |
| morex | INF2 | 11.818 | 6.12896 | 11.0157 |
| morex | CAR5 | 3.45954 | 10.666 | 16.3482 |
| morex | CAR15 | 0.211637 | 0 | 0 |
| morex | LEM | 10.7921 | 6.7048 | 1.1548 |
| morex | LOD | 18.1688 | 3.84084 | 10.1982 |
| morex | PAL | 12.635 | 9.38709 | 8.20029 |
| morex | SEN | 10.5502 | 14.4833 | 12.3834 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.2 | +2 | 2e-32 | 120 | 55/76 (72%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +2 | 8e-36 | 129 | 61/78 (78%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1034 bp)
>BART1_0-u04235.012 1034 150831_barley_pseudomolecules GCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGG GACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGC AAAGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGG GGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGGTATTCTTGG TCTCACTAGCTTTCTTAATATCTAAGGTGATAGTGTTGAATGTTATCAAGTATTAACTCT GTATCAAAATATAAAAACGTCTTATATTTTGATACAGAGGTAGTACTATCTAGTTCTGTA AGTATTTCAATGCTAATGGTTTGTCTTGTCGCATGGTCTGAATAACTTCTTTAATGCTGG AAAACATGTCCTGTTTGGCAACACCTGGATTGGGCCAGATAAAATGAAAATAGTCCAGCA AGAGAACTCTGCAAAAGATCAAATTATCACATCCCTATCCTCAAGCTGTCCCTTCAAACC GACATGGCACCCAAGATGCACAGCAACGATAACACTGGACTTTCTGTTGACTCGTCCTCT TCTCAGGCACACAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAG GTCGGAACATGAGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAG TAGTTTCCCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCC TGTTAGATAGTACTACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGA CGTCTGAACTCTGTATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCA TGCCCAGGTAAGTACATTATGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCC GAAGGACAAGGCATGTGTTCGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTAT AAAAAATGTAAGAC
Protein Sequence ( aa)
>BART1_0-u04235.012 150831_barley_pseudomolecules