- Transcript BART1_0-u04235.011
- Transcript IDBART1_0-u04235.011
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454318967 | 454318452 | + |
| chr1H | 2 | 454319154 | 454319063 | + |
| chr1H | 3 | 454321148 | 454319574 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.0508331 | 0 |
| morex | INF1 | 0 | 0.280813 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0.614734 |
| morex | CAR15 | 1.19004 | 0 | 1.05802 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.2 | +2 | 7e-31 | 120 | 55/76 (72%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +2 | 5e-34 | 129 | 61/78 (78%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2183 bp)
>BART1_0-u04235.011 2183 150831_barley_pseudomolecules GCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGG GACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGC AAAGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGG GGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGGTATTCTTGG TCTCACTAGCTTTCTTAATATCTAAGGTGATAGTGTTGAATGTTATCAAGTATTAACTCT GTATCAAAATATAAAAACGTCTTATATTTTGATACAGAGGTAGTACTATCTAGTTCTGTA AGTATTTCAATGCTAATGGTTTGTCTTGTCGCATGGTCTGAATAACTTCTTTAATGCTGG AAAACATGTCCTGTTTGGCAACACCTGGATTGGGCCAGATAAAATGAAAATAGTCCAGCA AGAGAACTCTGCAAAAGATCAAATTATCACATCCGTCTATCCTCAAGCTGTCCCTTCAAA CCGACATGGCACCCAAGATGCACAGCAACGATAACACTGGACTTTCTGTTGACTCGTCCT CTTCTCAGATCCTGGAAGGGGAGCCTTGGCGCAGAGGTAAAGCTGTCGCCTTGTTCCATG AGGTCACGGGTTCAAGTCCTGGAAACAGTCTCTTGCAGAAATGCAGGGAAATGCTGTGTA TAGAAGACCCAAAGTGGTCAGACCCTTCGCAAGCGGGAGCTACGTGCACCGGGCTGCCCC TATTTTCAAGATGCTGGTACCATGGCGTTCTATTATCCTTCACGGTCGATTTTCAAAAAA CTTATATTCTGAAATAATGTACTCCTTCAGTCCCAAATTTGAACTAAAACCACGACACTT ATTTTGGGATGGAGGGAGTATGTTAGAAGCCAGTAGACAATTGATATAATGTTATTCACG TCGCCAAACATACTTAAAGTTGCGGATCTATATGCTTGAAACTATCTAGATGGGACATGT GAAATATGTCACTAGACATGTCACTAGAAGTACTTCAAAAAAATTTGTCTGCACAAACAC AAAATTACAAGAAATAGTGTTCAAAGTAAAAAAGAAGTCGACAACATCATTCACAGATTC TTTGACACTTCTGATGTTTTTCTTCCTAAATTATTGGCATTTTCCCTAACCGCATGGTGA AATTTCCGAAAATACCCATGTTAGTTATACCCATCATAGCACACTTTTACCTGATTGCTG GTGCTTGTGGGTTATAAGAGGTATTTTGTCCAGATTGATTTAAACAATAACTTGCTTGTT ATGGGTGAGTTGATCAAAGTCCAAGTATTAGAAGTGCAGGGGGTAATTGACTTTGCATGA GATACACTCTTCTGTTATTGGGGGTATAACCACAAGAACTAAGGTGGTGTTTCTTTCCAA GGGACTAGACTTTTTTTAGTCCCAGGGACTAAAGAAAAAAGTCCCTCTAGTAGAGTCTTT TTCTAGTCCCTTAAGAAAAAGTCCCTCCTGTTTTTTTTACCTAGGGACTAAAAGGGATTT TTTTTAGTCTAGTCCCTCTAAAGAAACACCACCTAAGTCGTAACGAGCATTACTTATTTG CTCCATTGAGTTATTTGTGAGCACATTGTGGCAAAATATAACCCAATTTTGATTTCCAGG CACACAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGTCGGAA CATGAGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTAGTTTC CCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTGTTAGA TAGTACTACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGACGTCTGA ACTCTGTATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCATGCCCAG GTAAGTACATTATGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGAAGGAC AAGGCATGTGTTCGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTATAAAAAAT GTAAGACCTTTTTTGACAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTAAAGGGTCG TCAAAACTCAATACAAAACCAAG
Protein Sequence (103 aa)
>BART1_0-u04235.011 103 150831_barley_pseudomolecules MAPKMHSNDNTGLSVDSSSSQILEGEPWRRGKAVALFHEVTGSSPGNSLLQKCREMLCIE DPKWSDPSQAGATCTGLPLFSRCWYHGVLLSFTVDFQKTYILK