- Transcript BART1_0-u04235.010
- Transcript IDBART1_0-u04235.010
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454318575 | 454318452 | + |
| chr1H | 2 | 454321066 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 18.6543 | 11.8873 | 17.964 |
| morex | ETI | 30.8318 | 10.5403 | 7.25332 |
| morex | LEA | 0 | 15.3831 | 4.32321 |
| morex | EPI | 38.9332 | 44.2754 | 28.1393 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 18.5462 | 29.1477 | 18.2503 |
| morex | NOD | 0.0000000718432 | 2.78637 | 62.3688 |
| morex | RAC | 37.8002 | 57.6793 | 40.0401 |
| morex | INF1 | 0 | 6.78586 | 10.9989 |
| morex | INF2 | 0 | 0 | 0.0226164 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 46.0582 | 43.1491 | 54.3098 |
| morex | LOD | 20.6359 | 39.947 | 38.0134 |
| morex | PAL | 45.0453 | 41.4519 | 28.4846 |
| morex | SEN | 0 | 29.8953 | 20.5632 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (546 bp)
>BART1_0-u04235.010 546 150831_barley_pseudomolecules GCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGG GACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGC AAAGGCACACAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGT CGGAACATGAGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTA GTTTCCCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTG TTAGATAGTACTACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGACG TCTGAACTCTGTATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCATG CCCAGGTAAGTACATTATGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGA AGGACAAGGCATGTGTTCGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTATAA AAAATG
Protein Sequence ( aa)
>BART1_0-u04235.010 150831_barley_pseudomolecules