- Transcript BART1_0-u04235.009
- Transcript IDBART1_0-u04235.009
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454318681 | 454318081 | + |
| chr1H | 2 | 454319154 | 454319063 | + |
| chr1H | 3 | 454319761 | 454319574 | + |
| chr1H | 4 | 454321156 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.784248 | 0.519965 |
| morex | ETI | 0 | 1.47448 | 2.1016 |
| morex | LEA | 1.8416 | 2.23062 | 0.00012359 |
| morex | EPI | 0.704866 | 0.816399 | 0.333197 |
| morex | ROO | 0.658738 | 0.406899 | 0 |
| morex | ROO2 | 0.1891 | 0.594187 | 0 |
| morex | NOD | 8.64563 | 5.9564 | 3.39423 |
| morex | RAC | 0 | 0.510502 | 0.611889 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.686948 | 0.619228 | 1.38278 |
| morex | CAR5 | 2.32238 | 1.03923 | 1.55114 |
| morex | CAR15 | 0 | 0.200693 | 0 |
| morex | LEM | 3.31415 | 2.80953 | 1.49469 |
| morex | LOD | 1.65042 | 1.03035 | 3.35384 |
| morex | PAL | 1.85419 | 1.41861 | 1.17269 |
| morex | SEN | 0.649004 | 1.20428 | 1.26938 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.1 | +1 | 1e-33 | 126 | 60/103 (58%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +1 | 2e-46 | 159 | 80/107 (75%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1393 bp)
>BART1_0-u04235.009 1393 150831_barley_pseudomolecules GCAAGTTTTGAGACCTAATTGTTAAATTGCAGACTTTGCTGGCTTCAGTGGAAACATAGG TTTTAAACAGCTAGCGTCCATCGTTGCGTCTTTCATGTTCTGATGATTGCAGTTTCGCGT GCACTTTATGAGCTCATGAATATATCTGATCATGGATTGAGTTGCTCCTTGACACGTTTT TTTGGATCATCATGATGGAACTTATATTTCCAGATTTTGTCACCATATGGGACATTTTGA TGTTTGCTTATATTATCTGATAGGCTGCGTTCGTCGTCAAAATATATAATGCTTAAGTTC CTCTGATGTTAATGTTGTTGTGTAGCCTTCATGAAAACATGGTAGATTTCCTCTGATGTT AGTCTTGCTGTGCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAA GTGGTTGCTGGGACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGT ATGTACAAGGCAAAGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTC CGTCATGCCGGGGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAA GCTATCCTCAAGCTGTCCCTTCAAACCGACATGGCACCCAAGATGCACAGCAACGATAAC ACTGGACTTTCTGTTGACTCGTCCTCTTCTCAGATCCTGGAAGGGGAGCCTTGGCGCAGA GGTAAAGCTGTCGCCTTGTTCCATGAGGTCACGGGTTCAAGTCCTGGAAACAGTCTCTTG CAGAAATGCAGGGAAATGCTGTGTATAGAAGACCCAAAGTGGTCAGACCCTTCGCAAGCG GGAGCTACGTGCACCGGGCTGCCCCTATTTTCAAGATGCTGGCACACAAGGCGTGAAGGT TGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGTCGGAACATGAGGTTCTGAAATGT AGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTAGTTTCCCCTGTGCAAAGTTTTTA TCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTGTTAGATAGTACTACTATATGCTG TCACACGGACATTCTTTGAGCTTTTGACAGTTTGACGTCTGAACTCTGTATATTTGTTTT AAAACGTGGTGACTCTGTATATTACATACTGTTCATGCCCAGGTAAGTACATTATGGCAT TATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGAAGGACAAGGCATGTGTTCGGTGA ACCTACATATATACAAGTCACCACTCGCTTTGTATAAAAAATGTAAGACCTTTTTTGACA GTGACGTTGCCAAAAAAAAACGTCTTATATTCTAAAGGGTCGTCAAAACTCAATACAAAA CCAAGATCTTTAC
Protein Sequence (161 aa)
>BART1_0-u04235.009 161 150831_barley_pseudomolecules MVEVVDSGKKSMYKAKVWVKPWQNFKAVVEFRHAGDFQSESSVASDGSTGQAILKLSLQT DMAPKMHSNDNTGLSVDSSSSQILEGEPWRRGKAVALFHEVTGSSPGNSLLQKCREMLCI EDPKWSDPSQAGATCTGLPLFSRCWHTRREGCFHGVWNWKA