- Transcript BART1_0-u04235.008
- Transcript IDBART1_0-u04235.008
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454317765 | 454317704 | + |
| chr1H | 2 | 454318967 | 454318456 | + |
| chr1H | 3 | 454319154 | 454319063 | + |
| chr1H | 4 | 454321180 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.84355 | 1.41552 |
| morex | ETI | 0.973583 | 0.985182 | 0 |
| morex | LEA | 0 | 0 | 3.1715 |
| morex | EPI | 0.754319 | 0 | 1.20156 |
| morex | ROO | 1.34885 | 0 | 0 |
| morex | ROO2 | 0 | 0.711425 | 0 |
| morex | NOD | 2.05239 | 3.33818 | 0 |
| morex | RAC | 0 | 3.16221 | 0.976203 |
| morex | INF1 | 0 | 0.932789 | 0 |
| morex | INF2 | 0 | 2.42467 | 1.21298 |
| morex | CAR5 | 3.48057 | 1.34482 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 1.07267 | 0 | 2.54683 |
| morex | LOD | 1.15195 | 1.69055 | 1.49186 |
| morex | PAL | 1.32611 | 1.21216 | 2.36463 |
| morex | SEN | 2.2769 | 2.18296 | 0.993216 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.1 | +3 | 2e-33 | 124 | 57/87 (66%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +3 | 1e-37 | 135 | 63/82 (77%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1202 bp)
>BART1_0-u04235.008 1202 150831_barley_pseudomolecules GCGAGCGGGCCGAGGCCGAGGACGCCGCGCGCTTCGCCGTCGCTGAGCACAACAGGAAGC AGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGGGA CCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGCAA AGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGGGG ACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGGTATTCTTGGTC TCACTAGCTTTCTTAATATCTAAGGTGATAGTGTTGAATGTTATCAAGTATTAACTCTGT ATCAAAATATAAAAACGTCTTATATTTTGATACAGAGGTAGTACTATCTAGTTCTGTAAG TATTTCAATGCTAATGGTTTGTCTTGTCGCATGGTCTGAATAACTTCTTTAATGCTGGAA AACATGTCCTGTTTGGCAACACCTGGATTGGGCCAGATAAAATGAAAATAGTCCAGCAAG AGAACTCTGCAAAAGATCAAATTATCACATCCGTCTATCCTCAAGCTGTCCCTTCAAACC GACATGGCACCCAAGATGCACAGCAACGATAACACTGGACTTTCTGTTGACTCGTCCTCT TCTCAGGCACACAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAG GTCGGAACATGAGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAG TAGTTTCCCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCC TGTTAGATAGTACTACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGA CGTCTGAACTCTGTATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCA TGCCCAGGTAAGTACATTATGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCC GAAGGACAAGGCATGTGTTCGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTAT AAAAAATGTAAGACCTTTTTTGACAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTAA AGGGTCGTCAAAACTCAATACAAAACCAAGATCTTTACATGATTGAATATGTTAATGCAT TT
Protein Sequence (106 aa)
>BART1_0-u04235.008 106 150831_barley_pseudomolecules ERAEAEDAARFAVAEHNRKQGSALEFTRVVDAKRQVVAGTLHNLMVEVVDSGKKSMYKAK VWVKPWQNFKAVVEFRHAGDFQSESSVASDGSTGQGILGLTSFLNI