- Transcript BART1_0-u04235.007
- Transcript IDBART1_0-u04235.007
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454317765 | 454317506 | + |
| chr1H | 2 | 454318681 | 454318456 | + |
| chr1H | 3 | 454319761 | 454319063 | + |
| chr1H | 4 | 454321666 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 2.07672 | 2.47321 |
| morex | ETI | 1.89067 | 0 | 0.0000000165691 |
| morex | LEA | 2.44929 | 0 | 1.32592 |
| morex | EPI | 0.315131 | 0 | 0 |
| morex | ROO | 0.575979 | 0.935143 | 0.699083 |
| morex | ROO2 | 0.228007 | 0 | 0.398516 |
| morex | NOD | 2.38058 | 0 | 1.01484 |
| morex | RAC | 0.551424 | 0 | 0 |
| morex | INF1 | 0.889965 | 1.02414 | 2.43671 |
| morex | INF2 | 1.20762 | 0.296615 | 0.00108866 |
| morex | CAR5 | 0 | 0 | 1.28042 |
| morex | CAR15 | 0.227605 | 0 | 0 |
| morex | LEM | 0.0000181661 | 1.67843 | 0.0000000036381 |
| morex | LOD | 0.483195 | 0 | 0 |
| morex | PAL | 1.1658 | 0 | 0.732734 |
| morex | SEN | 0 | 0 | 0.00000297124 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.1 | +3 | 8e-42 | 151 | 87/143 (61%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.3.p | +3 | 3e-62 | 208 | 125/165 (76%) | pacid=32774293 transcript=Bradi2g25507.3 locus=Bradi2g25507 ID=Bradi2g25507.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2207 bp)
>BART1_0-u04235.007 2207 150831_barley_pseudomolecules CACACGCCGACGCCAAACCCCGCGAACCAATCGGGAGCTCGGGAGGAGCGACGATGGCCC GCCGCAGCGGCTGCTCCGTCGGCGCCGCGCTCCTCGCCCTCGCCGCCCTCCTCGCCGCCT CGGCCGTCCCCGGGGCCGCCGGGTTCCACCTCGGCGGCGACGAGAGCGGCCTCGTGCGGG GCATGCTCGCCGCCGTCCGCGAGCGGGCCGAGGCCGAGGACGCCGCGCGCTTCGCCGTCG CTGAGCACAACAGGAAGCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAA GGCAAGTGGTTGCTGGGACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGA AAAGTATGTACAAGGCAAAGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCG AGTTCCGTCATGCCGGGGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTG GGCAAGCTATCCTCAAGCTGTCCCTTCAAACCGACATGGCACCCAAGATGCACAGCAACG ATAACACTGGACTTTCTGTTGACTCGTCCTCTTCTCAGGTCTGTTTGATCACCCCTTCTC ATGTTCAACTCGTCACAATGCCTTTTCCAGTCACCATCAAAATGTCAAGTAGTTCATATT CATGGGCTAATATGTCTTATGGTTGATGATTTAACTTCCCTAGTAAGAAATAAATAAGGA CTTATCATGTTGTCTTGCTACTGCAGAAGTCTTTTATTCGAGAGGCAACATCCTAATCCA AATTAGGTTGCTGTCGCAAGTGTATTATCCACATACTATGAACATGAAAGATCTAAGCAT TTGCAATCCACCACCACCTAGTGTCACTCATTTTTCTGTTCTCTGTTTGAAGAAAGTATA GTCAATCATACACCAACACCAGGTCTTCCCCATGAAATCATTTGCAACTTGCAGTGATGA CATAGTTTATCCATTTTTTGAGTAACCTATTTTCAAGATCCTGGAAGGGGAGCCTTGGCG CAGAGGTAAAGCTGTCGCCTTGTTCCATGAGGTCACGGGTTCAAGTCCTGGAAACAGTCT CTTGCAGAAATGCAGGGAAATGCTGTGTATAGAAGACCCAAAGTGGTCAGACCCTTCGCA AGCGGGAGCTACGTGCACCGGGCTGCCCCTATTTTCAAGATGCTGGCACACAAGGCGTGA AGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGTCGGAACATGAGGTTCTGAA ATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTAGTTTCCCCTGTGCAAAGTT TTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTGTTAGATAGTACTACTATAT GCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGACGTCTGAACTCTGTATATTTG TTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCATGCCCAGGTAAGTACATTATG GCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGAAGGACAAGGCATGTGTTCG GTGAACCTACATATATACAAGTCACCACTCGCTTTGTATAAAAAATGTAAGACCTTTTTT GACAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTAAAGGGTCGTCAAAACTCAATAC AAAACCAAGATCTTTACATGATTGAATATGTTAATGCATTTTGTATTATGTGAATGAATT TATCTTCGCATTATCAATTATCTTAAACAAGGAGCAGAACTTGGCGCCATTTCATGTGCA CTTCCTCTCCTCTTCGAGAAGATTTTTCTAGATAAAAAGGCTTGAGACGTGTTCGACTTT TAATTAACAAAGCCATCAATCGATCAAGGATATAATGAGATTTTGAATTAACACAATGCC AAGGATTACAATAGACTTTGAATTAACAAAACCATCAACCGTCCAGGAATTACAAGGTTC GTGAGCAGCTTACAACACAACTTAGCAAGCACAAATGGTGTTGCCCACTACACTCCCCAA GAACTACAAGTAGAAGAGGAGCAGAGGATCATCCGATTGCCACGGGGAAGATCAAGACCA TGGCTGCTCCACTGGGCTGAGAAGAAGCAACTCCTTCCTTCTCTACTGCCGAAGAGGGCC CCAACCCTCACGTCCTGGCAGGACGCCACACCGTTGGTAAGAAGAGG
Protein Sequence (210 aa)
>BART1_0-u04235.007 210 150831_barley_pseudomolecules MARRSGCSVGAALLALAALLAASAVPGAAGFHLGGDESGLVRGMLAAVRERAEAEDAARF AVAEHNRKQGSALEFTRVVDAKRQVVAGTLHNLMVEVVDSGKKSMYKAKVWVKPWQNFKA VVEFRHAGDFQSESSVASDGSTGQAILKLSLQTDMAPKMHSNDNTGLSVDSSSSQVCLIT PSHVQLVTMPFPVTIKMSSSSYSWANMSYG