- Transcript BART1_0-u04235.006
- Transcript IDBART1_0-u04235.006
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454317765 | 454317503 | + |
| chr1H | 2 | 454318681 | 454318456 | + |
| chr1H | 3 | 454319154 | 454319063 | + |
| chr1H | 4 | 454321243 | 454319323 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 4.95012 | 4.88258 | 7.91106 |
| morex | ETI | 9.50862 | 6.063 | 5.06627 |
| morex | LEA | 6.33948 | 5.88028 | 6.70143 |
| morex | EPI | 7.67989 | 8.7534 | 6.40935 |
| morex | ROO | 3.00551 | 7.39298 | 3.04205 |
| morex | ROO2 | 1.24718 | 2.08776 | 1.46088 |
| morex | NOD | 15.6194 | 14.4693 | 8.51036 |
| morex | RAC | 8.54562 | 9.25812 | 8.75121 |
| morex | INF1 | 4.99377 | 2.78446 | 4.39114 |
| morex | INF2 | 4.5418 | 5.43904 | 5.85121 |
| morex | CAR5 | 11.4381 | 9.83692 | 11.6934 |
| morex | CAR15 | 0 | 1.97842 | 0.0877837 |
| morex | LEM | 5.19391 | 5.47839 | 4.85172 |
| morex | LOD | 7.48888 | 3.48114 | 6.56374 |
| morex | PAL | 4.22371 | 7.82064 | 5.26406 |
| morex | SEN | 6.38281 | 12.0847 | 8.75415 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.1 | +3 | 6e-42 | 152 | 85/152 (56%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +3 | 6e-57 | 193 | 114/146 (78%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2502 bp)
>BART1_0-u04235.006 2502 150831_barley_pseudomolecules CACCACACGCCGACGCCAAACCCCGCGAACCAATCGGGAGCTCGGGAGGAGCGACGATGG CCCGCCGCAGCGGCTGCTCCGTCGGCGCCGCGCTCCTCGCCCTCGCCGCCCTCCTCGCCG CCTCGGCCGTCCCCGGGGCCGCCGGGTTCCACCTCGGCGGCGACGAGAGCGGCCTCGTGC GGGGCATGCTCGCCGCCGTCCGCGAGCGGGCCGAGGCCGAGGACGCCGCGCGCTTCGCCG TCGCTGAGCACAACAGGAAGCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGA AAAGGCAAGTGGTTGCTGGGACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAA AGAAAAGTATGTACAAGGCAAAGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTG TCGAGTTCCGTCATGCCGGGGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCA CTGGGCAAGCTATCCTCAAGCTGTCCCTTCAAACCGACATGGCACCCAAGATGCACAGCA ACGATAACACTGGACTTTCTGTTGACTCGTCCTCTTCTCAGAAGTCTTTTATTCGAGAGG CAACATCCTAATCCAAATTAGGTTGCTGTCGCAAGTGTATTATCCACATACTATGAACAT GAAAGATCTAAGCATTTGCAATCCACCACCACCTAGTGTCACTCATTTTTCTGTTCTCTG TTTGAAGAAAGTATAGTCAATCATACACCAACACCAGGTCTTCCCCATGAAATCATTTGC AACTTGCAGTGATGACATAGTTTATCCATTTTTTGAGTAACCTATTTTCAAGATCCTGGA AGGGGAGCCTTGGCGCAGAGGTAAAGCTGTCGCCTTGTTCCATGAGGTCACGGGTTCAAG TCCTGGAAACAGTCTCTTGCAGAAATGCAGGGAAATGCTGTGTATAGAAGACCCAAAGTG GTCAGACCCTTCGCAAGCGGGAGCTACGTGCACCGGGCTGCCCCTATTTTCAAGATGCTG GTACCATGGCGTTCTATTATCCTTCACGGTCGATTTTCAAAAAACTTATATTCTGAAATA ATGTACTCCTTCAGTCCCAAATTTGAACTAAAACCACGACACTTATTTTGGGATGGAGGG AGTATGTTAGAAGCCAGTAGACAATTGATATAATGTTATTCACGTCGCCAAACATACTTA AAGTTGCGGATCTATATGCTTGAAACTATCTAGATGGGACATGTGAAATATGTCACTAGA CATGTCACTAGAAGTACTTCAAAAAAATTTGTCTGCACAAACACAAAATTACAAGAAATA GTGTTCAAAGTAAAAAAGAAGTCGACAACATCATTCACAGATTCTTTGACACTTCTGATG TTTTTCTTCCTAAATTATTGGCATTTTCCCTAACCGCATGGTGAAATTTCCGAAAATACC CATGTTAGTTATACCCATCATAGCACACTTTTACCTGATTGCTGGTGCTTGTGGGTTATA AGAGGTATTTTGTCCAGATTGATTTAAACAATAACTTGCTTGTTATGGGTGAGTTGATCA AAGTCCAAGTATTAGAAGTGCAGGGGGTAATTGACTTTGCATGAGATACACTCTTCTGTT ATTGGGGGTATAACCACAAGAACTAAGGTGGTGTTTCTTTCCAAGGGACTAGACTTTTTT TAGTCCCAGGGACTAAAGAAAAAAGTCCCTCTAGTAGAGTCTTTTTCTAGTCCCTTAAGA AAAAGTCCCTCCTGTTTTTTTTACCTAGGGACTAAAAGGGATTTTTTTTAGTCTAGTCCC TCTAAAGAAACACCACCTAAGTCGTAACGAGCATTACTTATTTGCTCCATTGAGTTATTT GTGAGCACATTGTGGCAAAATATAACCCAATTTTGATTTCCAGGCACACAAGGCGTGAAG GTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGTCGGAACATGAGGTTCTGAAAT GTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTAGTTTCCCCTGTGCAAAGTTTT TATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTGTTAGATAGTACTACTATATGC TGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGACGTCTGAACTCTGTATATTTGTT TTAAAACGTGGTGACTCTGTATATTACATACTGTTCATGCCCAGGTAAGTACATTATGGC ATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGAAGGACAAGGCATGTGTTCGGT GAACCTACATATATACAAGTCACCACTCGCTTTGTATAAAAAATGTAAGACCTTTTTTGA CAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTAAAGGGTCGTCAAAACTCAATACAA AACCAAGATCTTTACATGATTGAATATGTTAATGCATTTTGTATTATGTGAATGAATTTA TCTTCGCATTATCAATTATCTTAAACAAGGAGCAGAACTTGG
Protein Sequence (184 aa)
>BART1_0-u04235.006 184 150831_barley_pseudomolecules MARRSGCSVGAALLALAALLAASAVPGAAGFHLGGDESGLVRGMLAAVRERAEAEDAARF AVAEHNRKQGSALEFTRVVDAKRQVVAGTLHNLMVEVVDSGKKSMYKAKVWVKPWQNFKA VVEFRHAGDFQSESSVASDGSTGQAILKLSLQTDMAPKMHSNDNTGLSVDSSSSQKSFIR EATS