- Transcript BART1_0-u04235.005
- Transcript IDBART1_0-u04235.005
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454317765 | 454317495 | + |
| chr1H | 2 | 454318681 | 454318456 | + |
| chr1H | 3 | 454319158 | 454319063 | + |
| chr1H | 4 | 454321166 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 33.1702 | 35.0594 | 47.7076 |
| morex | ETI | 26.5287 | 46.179 | 54.3381 |
| morex | LEA | 47.9662 | 40.9218 | 62.1928 |
| morex | EPI | 22.9067 | 28.8092 | 22.812 |
| morex | ROO | 86.9443 | 35.9337 | 20.1031 |
| morex | ROO2 | 21.2231 | 31.9331 | 38.4482 |
| morex | NOD | 159.812 | 179.001 | 155.384 |
| morex | RAC | 35.7791 | 26.1585 | 13.6502 |
| morex | INF1 | 8.12328 | 15.7946 | 9.56959 |
| morex | INF2 | 33.6014 | 18.6769 | 12.8007 |
| morex | CAR5 | 23.0946 | 24.0431 | 16.0911 |
| morex | CAR15 | 3.35781 | 0.0428738 | 4.48243 |
| morex | LEM | 55.7127 | 47.1438 | 45.5348 |
| morex | LOD | 78.1148 | 44.8164 | 53.2744 |
| morex | PAL | 70.9729 | 67.1184 | 57.5325 |
| morex | SEN | 37.2074 | 23.6057 | 44.8798 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.1 | +2 | 5e-44 | 151 | 87/143 (61%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.3.p | +2 | 1e-61 | 197 | 118/152 (78%) | pacid=32774293 transcript=Bradi2g25507.3 locus=Bradi2g25507 ID=Bradi2g25507.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1115 bp)
>BART1_0-u04235.005 1115 150831_barley_pseudomolecules CAGACAGCCACCACACGCCGACGCCAAACCCCGCGAACCAATCGGGAGCTCGGGAGGAGC GACGATGGCCCGCCGCAGCGGCTGCTCCGTCGGCGCCGCGCTCCTCGCCCTCGCCGCCCT CCTCGCCGCCTCGGCCGTCCCCGGGGCCGCCGGGTTCCACCTCGGCGGCGACGAGAGCGG CCTCGTGCGGGGCATGCTCGCCGCCGTCCGCGAGCGGGCCGAGGCCGAGGACGCCGCGCG CTTCGCCGTCGCTGAGCACAACAGGAAGCAGGGTTCTGCATTGGAGTTTACACGGGTTGT GGACGCGAAAAGGCAAGTGGTTGCTGGGACCTTGCACAACCTGATGGTGGAGGTAGTGGA TTCTGGAAAGAAAAGTATGTACAAGGCAAAGGTATGGGTGAAGCCGTGGCAAAATTTCAA GGCGGTTGTCGAGTTCCGTCATGCCGGGGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGA TGGTAGCACTGGGCAAGCTATCCTCAAGCTGTCCCTTCAAACCGACATGGCACCCAAGAT GCACAGCAACGATAACACTGGACTTTCTGTTGACTCGTCCTCTTCTCAGGTCTGCACACA AGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGTCGGAACATGAG GTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTAGTTTCCCCTGT GCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTGTTAGATAGTAC TACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGACGTCTGAACTCTG TATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCATGCCCAGGTAAGT ACATTATGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGAAGGACAAGGCA TGTGTTCGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTATAAAAAATGTAAGA CCTTTTTTGACAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTAAAGGGTCGTCAAAA CTCAATACAAAACCAAGATCTTTACATGATTGAAT
Protein Sequence (200 aa)
>BART1_0-u04235.005 200 150831_barley_pseudomolecules MARRSGCSVGAALLALAALLAASAVPGAAGFHLGGDESGLVRGMLAAVRERAEAEDAARF AVAEHNRKQGSALEFTRVVDAKRQVVAGTLHNLMVEVVDSGKKSMYKAKVWVKPWQNFKA VVEFRHAGDFQSESSVASDGSTGQAILKLSLQTDMAPKMHSNDNTGLSVDSSSSQVCTQG VKVASMEYGTGRREGRNMRF