- Transcript BART1_0-u04235.003
- Transcript IDBART1_0-u04235.003
- Gene IDBART1_0-u04235
Barley RTD
Exon Structure of BART1_0-u04235.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454317765 | 454317348 | + |
| chr1H | 2 | 454318681 | 454318456 | + |
| chr1H | 3 | 454319154 | 454319063 | + |
| chr1H | 4 | 454321243 | 454319574 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0.712941 |
| morex | LEA | 0 | 0 | 0.488786 |
| morex | EPI | 0.409187 | 0.00884482 | 0.821319 |
| morex | ROO | 0 | 0 | 0.413724 |
| morex | ROO2 | 0 | 0.0988189 | 0.950233 |
| morex | NOD | 0 | 0.0641558 | 0.0000576916 |
| morex | RAC | 1.22999 | 0.115093 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 3.82111 | 2.09741 | 1.12546 |
| morex | LOD | 3.13421 | 0.483035 | 1.49894 |
| morex | PAL | 0 | 0.131437 | 2.08908 |
| morex | SEN | 0.365909 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.1 | +2 | 1e-41 | 151 | 85/143 (59%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +2 | 2e-57 | 194 | 114/146 (78%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2406 bp)
>BART1_0-u04235.003 2406 150831_barley_pseudomolecules CGCCGGACAAATCGGCTCCGATCCACCGCCCGATCCGGGCCGTGGACGTCTGGGATGCCT CGATCCGTCGCTGTCCCCCACACGCCAACCGAACCTGCCCCACTCGCTTTCCCCAACCCA AGAAGCAACGCGACGCAAGCAGGCAGGCAGACAGCCACCACACGCCGACGCCAAACCCCG CGAACCAATCGGGAGCTCGGGAGGAGCGACGATGGCCCGCCGCAGCGGCTGCTCCGTCGG CGCCGCGCTCCTCGCCCTCGCCGCCCTCCTCGCCGCCTCGGCCGTCCCCGGGGCCGCCGG GTTCCACCTCGGCGGCGACGAGAGCGGCCTCGTGCGGGGCATGCTCGCCGCCGTCCGCGA GCGGGCCGAGGCCGAGGACGCCGCGCGCTTCGCCGTCGCTGAGCACAACAGGAAGCAGGG TTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGGGACCTT GCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGCAAAGGT ATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGGGGACTT CCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGCTATCCTCAAGCTGTC CCTTCAAACCGACATGGCACCCAAGATGCACAGCAACGATAACACTGGACTTTCTGTTGA CTCGTCCTCTTCTCAGATCCTGGAAGGGGAGCCTTGGCGCAGAGGTAAAGCTGTCGCCTT GTTCCATGAGGTCACGGGTTCAAGTCCTGGAAACAGTCTCTTGCAGAAATGCAGGGAAAT GCTGTGTATAGAAGACCCAAAGTGGTCAGACCCTTCGCAAGCGGGAGCTACGTGCACCGG GCTGCCCCTATTTTCAAGATGCTGGTACCATGGCGTTCTATTATCCTTCACGGTCGATTT TCAAAAAACTTATATTCTGAAATAATGTACTCCTTCAGTCCCAAATTTGAACTAAAACCA CGACACTTATTTTGGGATGGAGGGAGTATGTTAGAAGCCAGTAGACAATTGATATAATGT TATTCACGTCGCCAAACATACTTAAAGTTGCGGATCTATATGCTTGAAACTATCTAGATG GGACATGTGAAATATGTCACTAGACATGTCACTAGAAGTACTTCAAAAAAATTTGTCTGC ACAAACACAAAATTACAAGAAATAGTGTTCAAAGTAAAAAAGAAGTCGACAACATCATTC ACAGATTCTTTGACACTTCTGATGTTTTTCTTCCTAAATTATTGGCATTTTCCCTAACCG CATGGTGAAATTTCCGAAAATACCCATGTTAGTTATACCCATCATAGCACACTTTTACCT GATTGCTGGTGCTTGTGGGTTATAAGAGGTATTTTGTCCAGATTGATTTAAACAATAACT TGCTTGTTATGGGTGAGTTGATCAAAGTCCAAGTATTAGAAGTGCAGGGGGTAATTGACT TTGCATGAGATACACTCTTCTGTTATTGGGGGTATAACCACAAGAACTAAGGTGGTGTTT CTTTCCAAGGGACTAGACTTTTTTTAGTCCCAGGGACTAAAGAAAAAAGTCCCTCTAGTA GAGTCTTTTTCTAGTCCCTTAAGAAAAAGTCCCTCCTGTTTTTTTTACCTAGGGACTAAA AGGGATTTTTTTTAGTCTAGTCCCTCTAAAGAAACACCACCTAAGTCGTAACGAGCATTA CTTATTTGCTCCATTGAGTTATTTGTGAGCACATTGTGGCAAAATATAACCCAATTTTGA TTTCCAGGCACACAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAA GGTCGGAACATGAGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTA GTAGTTTCCCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCC CTGTTAGATAGTACTACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTG ACGTCTGAACTCTGTATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTC ATGCCCAGGTAAGTACATTATGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCC CGAAGGACAAGGCATGTGTTCGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTA TAAAAAATGTAAGACCTTTTTTGACAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTA AAGGGTCGTCAAAACTCAATACAAAACCAAGATCTTTACATGATTGAATATGTTAATGCA TTTTGTATTATGTGAATGAATTTATCTTCGCATTATCAATTATCTTAAACAAGGAGCAGA ACTTGG
Protein Sequence (327 aa)
>BART1_0-u04235.003 327 150831_barley_pseudomolecules AGQIGSDPPPDPGRGRLGCLDPSLSPTRQPNLPHSLSPTQEATRRKQAGRQPPHADAKPR EPIGSSGGATMARRSGCSVGAALLALAALLAASAVPGAAGFHLGGDESGLVRGMLAAVRE RAEAEDAARFAVAEHNRKQGSALEFTRVVDAKRQVVAGTLHNLMVEVVDSGKKSMYKAKV WVKPWQNFKAVVEFRHAGDFQSESSVASDGSTGQAILKLSLQTDMAPKMHSNDNTGLSVD SSSSQILEGEPWRRGKAVALFHEVTGSSPGNSLLQKCREMLCIEDPKWSDPSQAGATCTG LPLFSRCWYHGVLLSFTVDFQKTYILK