- Transcript BART1_0-u03305.010
- Transcript IDBART1_0-u03305.010
- Gene IDBART1_0-u03305
Barley RTD
Exon Structure of BART1_0-u03305.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 366830565 | 366830179 | - |
| chr1H | 2 | 366831486 | 366831022 | - |
| chr1H | 3 | 366832371 | 366832002 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.56658 | 0.447235 | 0 |
| morex | ETI | 0.420993 | 0.233196 | 0 |
| morex | LEA | 0.236125 | 0 | 0.697011 |
| morex | EPI | 0.999998 | 0.515467 | 0.690189 |
| morex | ROO | 0.437574 | 0 | 0 |
| morex | ROO2 | 0.61662 | 0.90682 | 0 |
| morex | NOD | 0.467853 | 0.254546 | 0.953481 |
| morex | RAC | 0 | 0.488103 | 0.829081 |
| morex | INF1 | 0 | 0.269451 | 0 |
| morex | INF2 | 0.381295 | 0 | 0.536495 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0.14933 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.388148 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 1.1848 | 0.212658 | 0.598127 |
| morex | SEN | 0 | 0 | 0.824918 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g38950.1 | +2 | 2e-122 | 233 | 110/112 (98%) | protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed |
| TAIR PP10 | AT4G01370 @ ARAPORT AT4G01370.1 @ TAIR |
+2 | 9e-104 | 214 | 96/112 (86%) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 |
| BRACH PP3 | Bradi3g32000.1.p | +2 | 4e-125 | 235 | 112/112 (100%) | pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1222 bp)
>BART1_0-u03305.010 1222 150831_barley_pseudomolecules CTTCAAGCAATCATAAGTTACATGTTTTGCATTGCAGTACTTCTTGTATCAATTGCTTCG AGGGCTAAAATATGTGCACTCAGCAAATGTCTTGCACCGTGATCTGAAGCCAAGCAATTT GTTCCTAAACGCAAATTGCGATCTCAAGATTGCTGACTTTGGGCTTGCAAGGACCACTTC AGAAACTGATCTCATGACAGAGTATGTGGTCACTCGTTGGTACCGAGCGCCAGAGTTGCT GTTGAACTGTTCACAATATACTGCTGCTATTGATGTCTGGTCAGTTGGGTGCATACTTGG TGAAATTATTACTCGTCAACCCCTGTTTCCTGGAAGAGATTACATCCAACAGTTAAAGTT AATCACCGAGTCCTTTCCGGCATTCTGCTTCAAAAGCTGATAGGATCACCAGATGATTCA AGCCTGGGATTTCTTCGGAGTGATAATGCACGAAGATACATGAAGCAATTACCACAGTAC CCAAGGCAGGACTTCCGCCTGCGCTTCCGCAACATGTCTGATGGTGCAGTTGATCTGTTA GAGAGGATGCTGGTGTTTGACCCAAGCAGACGCATTACTGGTACATGGGCTTGAACTAAC TACTTAAGTTAGTTTTGTTCGCATTACTATTGCTCAAAATCATTTTTCATGCAGTTGATG AGGCTCTGCATCACCCATACTTGGCTTCTCTTCATGACATCAATGAAGAACCCACTTGCC CGGCACCTTTCAGCTTTGATTTTGAGCAACCATCTTTTACAGAAGAACATATGAAAGAGC TCATCTGGAGGGAAACTTTAGCATTTAACCCTGATCCGCCCTACTAAGAGCCAAGGCATT CAAGTTAATTCATGTTGTTTTCCTTGGGAGCACAGACCAAATTACCAGCTGAGGGCATTG AAGATCTACCTCTAGCTCTAGTGAAGCCGATATTTCCATGTCTTGTGCATCTATTTATTT TATGCTCGCTTATTGGGCGAATGGGCATGGATTATTTGTTGCTGTAACTATTTCTTTTGT GGCCTTTCTGAAGAAACGACATTTGTATGAGATGGCTTGTATTATACCGGTTGATTGAAT AAACTGGTCTTGTGTATCTAAAGCTTGTAATTTTGTGTACACTTATCTAAACATCCCATG TATATCTGAGTTAACATATTCCCTTTTATTATCTCAAGCATGTAATTTGGCATTTTGTGA TCGGTCGTATCGAAGTTGCCGA
Protein Sequence ( aa)
>BART1_0-u03305.010 150831_barley_pseudomolecules