Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU1Hr1G049500	97.8	-	-	4173	-95	Containing

Transcripts from Gene BART1_0-u03305

Transcript	Length(bp)	Description
BART1_0-u03305.001	1829	1829 bp MSTRG.3305.1 MSTRG.3305
BART1_0-u03305.002	2096	2096 bp MSTRG.3305.2 MSTRG.3305
BART1_0-u03305.003	1879	1879 bp MSTRG.3305.3 MSTRG.3305
BART1_0-u03305.004	1788	1788 bp MSTRG.3305.4 MSTRG.3305
BART1_0-u03305.005	1447	1447 bp MSTRG.3305.5 MSTRG.3305
BART1_0-u03305.006	1833	1833 bp MSTRG.3305.6 MSTRG.3305
BART1_0-u03305.007	1845	1845 bp MSTRG.3305.7 MSTRG.3305
BART1_0-u03305.008	1164	1164 bp MSTRG.3305.8 MSTRG.3305
BART1_0-u03305.009	1679	1679 bp MSTRG.3305.9 MSTRG.3305
BART1_0-u03305.010	1222	1222 bp MSTRG.3305.10 MSTRG.3305

Exon Structure of BART1_0-u03305

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os10g38950.1	+1	2e-104	315	148/160 (93%)	protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
TAIR PP10	AT4G01370 @ ARAPORT AT4G01370.1 @ TAIR	+1	7e-96	290	130/160 (81%)	Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376
BRACH PP3	Bradi3g32000.1.p	+1	3e-108	322	153/160 (96%)	pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0042539	hypotonic salinity response
GO:0090333	regulation of stomatal closure
GO:0000911	cytokinesis by cell plate formation
GO:0009555	pollen development
GO:0007112	male meiosis cytokinesis
GO:0043622	cortical microtubule organization
GO:0002221	pattern recognition receptor signaling pathway
GO:0005874	microtubule
GO:0000165	MAPK cascade
GO:0005524	ATP binding
GO:0009409	response to cold
GO:0005829	cytosol
GO:0010311	lateral root formation
GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009620	response to fungus
GO:0009861	jasmonic acid and ethylene-dependent systemic resistance
GO:0043531	ADP binding
GO:0009504	cell plate
GO:0009867	jasmonic acid mediated signaling pathway
GO:0006972	hyperosmotic response
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0005515	protein binding
GO:0009737	response to abscisic acid
GO:0071244	cellular response to carbon dioxide
GO:0005737	cytoplasm
GO:0045087	innate immune response
GO:0016021	integral component of membrane
GO:0010468	regulation of gene expression
GO:0004707	MAP kinase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons