- Transcript BART1_0-u03305.008
- Transcript IDBART1_0-u03305.008
- Gene IDBART1_0-u03305
Barley RTD
Exon Structure of BART1_0-u03305.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 366830525 | 366830156 | - |
| chr1H | 2 | 366831202 | 366831022 | - |
| chr1H | 3 | 366831486 | 366831277 | - |
| chr1H | 4 | 366832262 | 366832002 | - |
| chr1H | 5 | 366832938 | 366832797 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.57256 | 1.55632 | 3.47947 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 1.18714 | 2.09143 | 0.78375 |
| morex | EPI | 1.06441 | 0 | 0 |
| morex | ROO | 0.919521 | 0 | 0 |
| morex | ROO2 | 0 | 0.240299 | 0 |
| morex | NOD | 4.72965 | 1.05228 | 1.40196 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 1.13827 | 0.505743 | 2.70196 |
| morex | INF2 | 0 | 0.324824 | 0 |
| morex | CAR5 | 0 | 0.418339 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g38950.1 | +2 | 6e-134 | 253 | 124/158 (78%) | protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed |
| TAIR PP10 | AT4G01370 @ ARAPORT AT4G01370.1 @ TAIR |
+2 | 9e-114 | 229 | 107/158 (68%) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 |
| BRACH PP3 | Bradi3g32000.1.p | +2 | 5e-138 | 259 | 129/158 (82%) | pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1164 bp)
>BART1_0-u03305.008 1164 150831_barley_pseudomolecules ACAGATTCTTGCCATGAAGGATTTAATACGCCCCCCAAGAAGAGATGATTTTAAGGATGT GTACATTGTTACTGAGTTGATGGACACTGATCTCCATCAGATCATTCGCTCAAATCAATC ATTGACTGATGACCATTGCCAGCCAAGCAATTTGTTCCTAAACGCAAATTGCGATCTCAA GATTGCTGACTTTGGGCTTGCAAGGACCACTTCAGAAACTGATCTCATGACAGAGTATGT GGTCACTCGTTGGTACCGAGCGCCAGAGTTGCTGTTGAACTGTTCACAATATACTGCTGC TATTGATGTCTGGTCAGTTGGGTGCATACTTGGTGAAATTATTACTCGTCAACCCCTGTT TCCTGGAAGAGATTACATCCAACAGTTAAAGTTAATCACCGAGTCCTTTCCGGCATTCTG CTTCAAAAGCTGATAGGATCACCAGATGATTCAAGCCTGGGATTTCTTCGGAGTGATAAT GCACGAAGATACATGAAGCAATTACCACAGTACCCAAGGCAGGACTTCCGCCTGCGCTTC CGCAACATGTCTGATGGTGCAGTTGATCTGTTAGAGAGGATGCTGGTGTTTGACCCAAGC AGACGCATTACTGTTGATGAGGCTCTGCATCACCCATACTTGGCTTCTCTTCATGACATC AATGAAGAACCCACTTGCCCGGCACCTTTCAGCTTTGATTTTGAGCAACCATCTTTTACA GAAGAACATATGAAAGAGCTCATCTGGAGGGAAACTTTAGCATTTAACCCTGATCCGCCC TACTAAGAGCCAAGACCAAATTACCAGCTGAGGGCATTGAAGATCTACCTCTAGCTCTAG TGAAGCCGATATTTCCATGTCTTGTGCATCTATTTATTTTATGCTCGCTTATTGGGCGAA TGGGCATGGATTATTTGTTGCTGTAACTATTTCTTTTGTGGCCTTTCTGAAGAAACGACA TTTGTATGAGATGGCTTGTATTATACCGGTTGATTGAATAAACTGGTCTTGTGTATCTAA AGCTTGTAATTTTGTGTACACTTATCTAAACATCCCATGTATATCTGAGTTAACATATTC CCTTTTATTATCTCAAGCATGTAATTTGGCATTTTGTGATCGGTCGTATCGAAGTTGCCG ATATAATTTCGCTCTGAAATTCAG
Protein Sequence (143 aa)
>BART1_0-u03305.008 143 150831_barley_pseudomolecules QILAMKDLIRPPRRDDFKDVYIVTELMDTDLHQIIRSNQSLTDDHCQPSNLFLNANCDLK IADFGLARTTSETDLMTEYVVTRWYRAPELLLNCSQYTAAIDVWSVGCILGEIITRQPLF PGRDYIQQLKLITESFPAFCFKS